Glyma19g33650 - SoyBase

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Report for Sequence Feature Glyma19g33650

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41237306
stop:	41242657
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G48150	AT	Annotation by Michelle Graham. TAIR10: glutathione peroxidase 4 \| chr2:19688109-19689099 REVERSE LENGTH=170	SoyBase	E_val: 1.00E-87	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009688	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004602	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione peroxidase activity	SoyBase	N/A	ISS
KOG1651	KOG	Glutathione peroxidase	JGI		ISS
PTHR11592	Panther	GLUTATHIONE PEROXIDASE	JGI		ISS
PF00255	PFAM	Glutathione peroxidase	JGI		ISS
UniRef100_I1N9F3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione peroxidase n=1 Tax=Glycine max RepID=I1N9F3_SOYBN	SoyBase	E_val: 2.00E-125	ISS
UniRef100_I1N9F3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glutathione peroxidase n=1 Tax=Glycine max RepID=I1N9F3_SOYBN	SoyBase	E_val: 2.00E-125	ISS

Expression Patterns of Glyma19g33650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g33650 not represented in the dataset	Glyma19g33650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33650

Paralog	Evidence	Comments
Glyma03g30800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g154100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g33650

Limit To All Plant Sequences

>Glyma19g33650.2   sequence type=transcript   gene model=Glyma19g33650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCGGAACCACCTTTAAAAAAACGAAAAAAGAAAACTAAAATATTGATTACGTGGTTTTAAATTCTTGATTTTTGGCTAATCAAGTACTTGATGTTGGGGAAACTGTCAACTTTAATCATGAAAAAAACATGAAAGTTGTCCATCTGCCATTGCTGGACCACGCACTTAAATCTTAATGGATGAAATTTGAGAGAGAGAATGCTATAAAACTGTTGAAGAAATTGGTAAACCCAAAATATTAGCATAGACATAAATTAAGAAATCAAAGAGACAGAAAGTTGAGAGAGAAGTGTTCACGTCTTTGAGAAATGGGTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCAAATAAAACAGGATTTCTGGGTAGTAGGATAAAGTGGAATTTCACTAAGTTTTTGGTTGACAAGGAAGGGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAAATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTTCAAATTGGTGCTCTTGTTGAAGATGATTGAAACATAAGGAATGTATATTTGTAGATGTTTCTTCTAGTGATTATTTCTTACATATTTCATGCCTAGGTTTTTTTGTGTTTGTTGTATTAGAATTCTGTTTTGTTTGTGATTTTAGTCGTTATTTAAAAATTAATTAATGGGCATTAGTTTGAGTTGTGTGTTAGAAGTGTGTTTTCATGTATCACTTACTAAATGCATGCAATCTTCATGGCCTCATGTGTATTAATGTCTAGGAAGTTGCATCACTTGTTATAATGCTAGGGAACAGTCCCTACCAAGTCTATCAAGAGTCTATATATATGGATGATATGAAGAACCTATGTACTGTATTTTACAAGAACAAAAAGCTTTTCATTCTCTAAATTCTCTCAGAAGATTTTGTTTTCTCTCTCACCTTATATCTCCCCCTCTAAATTCACTAACTTGTGGTTCATTTGTTTTGGTGGAATGGGGAGGAAAGAAAAATCACAAAGAATTAACCCTTCCTTCATTTGGTGACGGCATACAAAGGAAGTTTTTATGTACACGAGTC

>Glyma19g33650.3   sequence type=transcript   gene model=Glyma19g33650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCGGAACCACCTTTAAAAAAACGAAAAAAGAAAACTAAAATATTGATTACGTGGTTTTAAATTCTTGATTTTTGGCTAATCAAGTACTTGATGTTGGGGAAACTGTCAACTTTAATCATGAAAAAAACATGAAAGTTGTCCATCTGCCATTGCTGGACCACGCACTTAAATCTTAATGGATGAAATTTGAGAGAGAGAATGCTATAAAACTGTTGAAGAAATTGGTAAACCCAAAATATTAGCATAGACATAAATTAAGAAATCAAAGAGACAGAAAGTTGAGAGAGAAGTGTTCACGTCTTTGAGAAATGGGTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGAAATCTCTTCTCATGGTTGGCACAGGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCAAATAAAACAGGATTTCTGGGTAGTAGGATAAAGTGGAATTTCACTAAGTTTTTGGTTGACAAGGAAGGGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAAATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTTCAAATTGGTGCTCTTGTTGAAGATGATTGAAACATAAGGAATGTATATTTGTAGATGTTTCTTCTAGTGATTATTTCTTACATATTTCATGCCTAGGTTTTTTTGTGTTTGTTGTATTAGAATTCTGTTTTGTTTGTGATTTTAGTCGTTATTTAAAAATTAATTAATGGGCATTAGTTTGAGTTGTGTGTTAGAAGTGTGTTTTCATGTATCACTTACTAAATGCATGCAATCTTCATGGCCTCATGTGTATTAATGTCTAGGAAGTTGCATCACTTGTTATAATGCTAGGGAACAGTCCCTACCAAGTCTATCAAGAGTCTATATATATGGATGATATGAAGAACCTATGTACTGTATTTTACAAGAACAAAAAGCTTTTCATTCTCTAAATTCTCTCAGAAGATTTTGTTTTCTCTCTCACCTTATATCTCCCCCTCTAAATTCACTAACTTGTGGTTCATTTGTTTTGGTGGAATGGGGAGGAAAGAAAAATCACAAAGAATTAACCCTTCCTTCATTTGGTGACGGCATACAAAGGAAGTTTTTATGTACACGAGTC

Coding sequences of Glyma19g33650

Limit To All Plant Sequences

>Glyma19g33650.1   sequence type=CDS   gene model=Glyma19g33650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCAAATAAAACAGGATTTCTGGGTAGTAGGATAAAGTGGAATTTCACTAAGTTTTTGGTTGACAAGGAAGGGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAGTACAATCTCTCTCTATTTCTCTCCATGGAGTGCATATGTGA

>Glyma19g33650.2   sequence type=CDS   gene model=Glyma19g33650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCAAATAAAACAGGATTTCTGGGTAGTAGGATAAAGTGGAATTTCACTAAGTTTTTGGTTGACAAGGAAGGGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAAATGACATCAAGACAGCATTGGGGGAGGCTTGA

>Glyma19g33650.3   sequence type=CDS   gene model=Glyma19g33650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCATGGTCAAGAAATCTCTTCTCATGGTTGGCACAGGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCAAATAAAACAGGATTTCTGGGTAGTAGGATAAAGTGGAATTTCACTAAGTTTTTGGTTGACAAGGAAGGGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAAATGACATCAAGACAGCATTGGGGGAGGCTTGA

Predicted protein sequences of Glyma19g33650

Limit To All Plant Sequences

>Glyma19g33650.1   sequence type=predicted peptide   gene model=Glyma19g33650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASASVTEKSIHEFMVKDAKGRDVNLSTYKGKVLLVVNVASKCGFTNSNYTQLTELYSKYKDRGLEILAFPCNQFLKQEPGSSQEAEEFACTRYKAEYPIFGKVRVNGPDTAPVYKFLKANKTGFLGSRIKWNFTKFLVDKEGHVLARYGPTTSPLSIEVQSLSISLHGVHM*

>Glyma19g33650.2   sequence type=predicted peptide   gene model=Glyma19g33650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASASVTEKSIHEFMVKDAKGRDVNLSTYKGKVLLVVNVASKCGFTNSNYTQLTELYSKYKDRGLEILAFPCNQFLKQEPGSSQEAEEFACTRYKAEYPIFGKVRVNGPDTAPVYKFLKANKTGFLGSRIKWNFTKFLVDKEGHVLARYGPTTSPLSIENDIKTALGEA*

>Glyma19g33650.3   sequence type=predicted peptide   gene model=Glyma19g33650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSWSRNLFSWLAQDAKGRDVNLSTYKGKVLLVVNVASKCGFTNSNYTQLTELYSKYKDRGLEILAFPCNQFLKQEPGSSQEAEEFACTRYKAEYPIFGKVRVNGPDTAPVYKFLKANKTGFLGSRIKWNFTKFLVDKEGHVLARYGPTTSPLSIENDIKTALGEA*

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