Report for Sequence Feature Glyma19g33630
Feature Type: gene_model
Chromosome: Gm19
Start: 41198652
stop: 41205833
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g33630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G02900 AT
Annotation by Michelle Graham. TAIR10: ERD (early-responsive to dehydration stress) family protein | chr4:1284066-1287747 FORWARD LENGTH=785
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
KOG1134
KOG
Uncharacterized conserved protein
JGI ISS
PTHR13018 Panther
PROBABLE MEMBRANE PROTEIN DUF221-RELATED
JGI ISS
PTHR13018:SF5 Panther
RSN1(YEAST)-RELATED PROBABLE MEMBRANE PROTEIN
JGI ISS
PF02714 PFAM
Domain of unknown function DUF221
JGI ISS
UniRef100_Q9SY14 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ERD (Early-responsive to dehydration stress) family protein n=2 Tax=Arabidopsis thaliana RepID=Q9SY14_ARATH
SoyBase E_val: 0 ISS
UniRef100_UPI000233EFF1 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EFF1 related cluster n=1 Tax=unknown RepID=UPI000233EFF1
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g33630
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g33630
Paralog Evidence Comments
Glyma03g30780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g33630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g153800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g33630
Coding sequences of Glyma19g33630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g33630.1 sequence type=CDS gene model=Glyma19g33630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGACTATTGGAGATATTTGTGTTTCGGCATCCATCAATCTGTTGTCTGCGTTGGCATTCCTGTTGGCATTTGGAATATTGCGACTTCAGCCCTTTAACGATAGGGTCTACTTCCCAAAATGGTATCTGAAGGGGATAAGAGGCAGTCCAACAGGATCCAATGCAGTAAAGAAATTTGTTAATTTGGACTTTGCAACCTACATCAGGTTTCTGAATTGGATGCCTGCAGCATTGCATATTCAAGAACCCGAGCTTATTGATCATGCAGGGCTTGACTCAACCGTTTATATTCGGATTTATCTTCTTGGGGTCAAAATATTTGCTCCAATCACCTTACTTGCTTTTATGGTTTTGGTTCCTGTTAACTGGTTCGGGAAAACATTGGAAGCACCGGGAGCTAAGGATTTGACATTCAGCAGTATTGACAAGATTTCGATATCAAACATTCCATTTGGATCAGATAGGTTTTGGGCGCATATTGTAATGTCATATGTCTTCTCATCTTGGACATGCTACAGTCTTTATAAGGAATACGGGATTATAGCAGAAATGAGATTGCGATTTTTGGCAGCTGAACGTCGTCGTCCGGACCAGTTCACTGTCCTGGTAAGGAATGTTCCCACAGATCCCGATGAATCAGTCAGTGAGCACATCGAACATTTTTTTTGCGTCAACCATCCTGATCACTATCTGATGCATCAGGTTGTTTATAATGCGAACAAGCTTGCATCCATAGCTGCAAAGAAGAAGAAATTAATAAACTGGCATGTTTACTACCAAAACAAATACGAAAGAAATCCTTCCAAGAGGCCAACTATTCGGACAGGTTTCCTGGGTTTCTTGGGGAATAAAGTTGATGCTATTGATCATTATACTGCAATAATTGATAATTTGAGCAAACAAGAAGCCCAAGAAAGAGAAAATATTATAAACAATCCGACTGCTGTTATTCCTGCAGCTTTTGTTTCATTCAAAACACGATGGGCGGCAGCTGTGTGTGCTCAAACTCAACAAACTAGTAATCCTACTATTTGGCTCACAGAATGGGCTCCTGAGCCTCGGGATGTCTTTTGGGAAAATCTTGCCATTCCATATTTTGACCTCAACATGCGAAGATTGCTCATGACAGTTTCTTTATTTTTCCTAACCTTCTGCTTTATGATACCAATAGCATTGGTCCAATCTCTGGCCAACATTGAGGCAATTGAGAAAGTCCTTCCTTTCTTGAAGCCAATAATTGAAAAGTCATCTATCAAGTCTGTTATTCAAGGCTTTCTGCCAGGGCTAGCATTAAAGATATTTCTTATAATGCTTCCAAAGATTCTTATGACGATGTCCAAAATGGAAGGTTTTACTTCGCTTTCAGGTTTGGATCGGAGGTCAGCTTCCAAATATTACTTGTTTGTTCTCGTCAATGTGTTCCTTGGGAGTGTTATAACAGGAACAGCATTTCAGCAACTTCAGCAGTTTATTAGTCAGCCCTCAACAGAGTTCACAAAAACTGTTGGCAGTACAATCCCCATGAAAGCCACATTCTTCATCACATACATAATGATCGACGGTTGGGCTGGAATAGCTGCAGAGATCCTTAGGTTATCTCCGTTGATTACGTTCCACATGAAAAACACATTCTTGGTGAAGACAGAACAAGACAGACAGAATGCTATGGATCCTGGTAGCTTGGAATTTGCCACATCTGAACCTCGCATCCAGTTATATTTCATGTTGGGGCATGTGTATGCTCCAGTCACACCTTTTCTTCTCCCCTTCATTGTAGTCTTCTTTGCTTTTGCCTACATGATCTTTAGGCACCAGATAATCAATGTGTATGCCCAGCAATACGAGAGTGGAGGAGCGTTTTGGCCAGATGTCCACGGTCGAGTAGTTATGGGCTTGATTATATCTCAAATTCTTCTTATGGGATTGTTAACTACAAGAGGTACAGATAAGTCGACTCTAGTGCTTATTGCACAACCCATCTTGACATTCTGGTTCCACAGATATTGCAAAGGTCGCTTCGAATCTGCATTTGTAAAATTTCCACTAGAGGAAGCCATGGTGAAGGATACACTTGAGCGGGCTGTGGAGCCAAACTTAAACCTGAGAATTTATCTTCAGGATGCTTACGTGCACCCAGTTTTTAAGGGCGATGATTTTGAAAAACCAGCAATCATTGATGATGAAGAGGGCAATCCGCTTATTCAGACAACGAGAGCCTCTCGTCAGGATAGCAGGCCAGAATCTGATAGTGAAACCGGCAGTTGCTAA
Predicted protein sequences of Glyma19g33630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g33630.1 sequence type=predicted peptide gene model=Glyma19g33630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATIGDICVSASINLLSALAFLLAFGILRLQPFNDRVYFPKWYLKGIRGSPTGSNAVKKFVNLDFATYIRFLNWMPAALHIQEPELIDHAGLDSTVYIRIYLLGVKIFAPITLLAFMVLVPVNWFGKTLEAPGAKDLTFSSIDKISISNIPFGSDRFWAHIVMSYVFSSWTCYSLYKEYGIIAEMRLRFLAAERRRPDQFTVLVRNVPTDPDESVSEHIEHFFCVNHPDHYLMHQVVYNANKLASIAAKKKKLINWHVYYQNKYERNPSKRPTIRTGFLGFLGNKVDAIDHYTAIIDNLSKQEAQERENIINNPTAVIPAAFVSFKTRWAAAVCAQTQQTSNPTIWLTEWAPEPRDVFWENLAIPYFDLNMRRLLMTVSLFFLTFCFMIPIALVQSLANIEAIEKVLPFLKPIIEKSSIKSVIQGFLPGLALKIFLIMLPKILMTMSKMEGFTSLSGLDRRSASKYYLFVLVNVFLGSVITGTAFQQLQQFISQPSTEFTKTVGSTIPMKATFFITYIMIDGWAGIAAEILRLSPLITFHMKNTFLVKTEQDRQNAMDPGSLEFATSEPRIQLYFMLGHVYAPVTPFLLPFIVVFFAFAYMIFRHQIINVYAQQYESGGAFWPDVHGRVVMGLIISQILLMGLLTTRGTDKSTLVLIAQPILTFWFHRYCKGRFESAFVKFPLEEAMVKDTLERAVEPNLNLRIYLQDAYVHPVFKGDDFEKPAIIDDEEGNPLIQTTRASRQDSRPESDSETGSC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
