Glyma19g33620 - SoyBase

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Report for Sequence Feature Glyma19g33620

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41194146
stop:	41196743
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03310	AT	Annotation by Michelle Graham. TAIR10: debranching enzyme 1 \| chr1:813975-816623 FORWARD LENGTH=882	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0010021	GO-bp	Annotation by Michelle Graham. GO Biological Process: amylopectin biosynthetic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004556	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-amylase activity	SoyBase	N/A	ISS
GO:0019156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isoamylase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0470	KOG	1,4-alpha-glucan branching enzyme/starch branching enzyme II	JGI		ISS
PTHR10357	Panther	AMYLASE	JGI		ISS
PTHR10357:SF75	Panther	ALPHA-AMLYASE	JGI		ISS
PF00128	PFAM	Alpha amylase, catalytic domain	JGI		ISS
PF02922	PFAM	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)	JGI		ISS
UniRef100_A4PIS9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoamylase-type starch-debranching enzyme 2 n=1 Tax=Phaseolus vulgaris RepID=A4PIS9_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_UPI000233ED1D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ED1D related cluster n=1 Tax=unknown RepID=UPI000233ED1D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33620

Paralog	Evidence	Comments
Glyma03g30771	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g153700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33620

Limit To All Plant Sequences

>Glyma19g33620.2   sequence type=CDS   gene model=Glyma19g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTCTCGCGCCACGCTTTTCATTCTCAGTGATTCCTCGGAATCACCACAAACTCAAACGCTCTTTTTCTCACAAACCCTTTATCCAAAGGAAGCAGCTTTGGCACCAACTTGGATTGCAAAGCCTCGTTTCCCCCTTTTCCCTTAACCCCACTTCTTCAAAATTGTGTGCCACGTCACGGTTGTCCATTGAGGAAACGGAGCAGCAAATCGGAACCTTGACCCGACCCGAAGACCTAAAAGGGTCATTGGCGTATCTGTTTAGGACTGAAACTGGTGGCGGTTTGGTGAAAGTTCATGTCACAAGGAGAAATGATAGGTATTCTGTTTACATTGAGATTTCTTCGTTGGATATAAGTGGCGGTGTTGGTGAAGCGCTTTTGTTGTGTTGGGGTGTGTATAGAAGTGATTCATCGTGTTTTGTGGATCTGGATACGATAGGTTTGAGTGAAAATGCGGCAATGGGGATGAATGTTAGTCCCTTGGTGCAAAATTCTGATGGAAAGTTTGCAATTGAGTTGGAATTTGATGCCAAGCATGTTCCTTTGTACTTGTCGTTTTTCTTGATGTCGTCTTTGGATTCAGGGTTGGAGATCAGAAGCCATAGGAGAACGAATTTTTGCATGCCGGTTGGGTCGCTTCCTGGGTACCCTTGTCCTTTGGGGGTCTCTTATTCTCCTGATGGGTCTGTGAATTTTTCTATTTTCTCTAGACATGCTGAGAGTGTGGTTTTGTGCTTGTATGATGAGAATGGCGTGGAGAAGCCTGCTTTGGAGCTTGATTTGGATCCTTATGTGAATAGGACAGGTGATATCTGGCATGTCTCGTTTGAGAGTGCTAAGGGTTTTGTGAGCTATGGTTATCGCTGCAGACGGGGTGTTCTTAAGAAGAACAAGGATGATGGTTTTGCTGAGCATGTTGTTTTGGATCCGTATGCTAAGATTGTTGGGAACTCTTATCCTGATGGTGTTGGATTAGTGAAGAATCTTGGATGTTTGAGGAAGGAACCTTTTTTTGATTGGGGTGGTGATCGTCATCCGGATTTGTCCATGGAGAAACTAGTGGTTTATAGGTTGAATGTGAAGCGCTTTACGCAACACGAGTCCAGCCAACTTCCAAGTGGCTTAGCTGGGACCTTTACTGGTTTGGCTAAGAAGGTGCAGCATTTTAAAGATCTAGGAGTGAACGCCGTTCTGCTGGAGCCGGTTTTCACGTTTGATGAGAAAAAGGGACCATATTTTCCTTGCCACTTTTTCTCTCTGATGCACATTTATGGACCATCTGGTGGTCCTGTATCTGCTATTGCCGCTATGAAAGAGATGGTTAAAACTATGCATGCCAATGGGATAGAAGTTCTTGTGGAAGTTGTTTTCTCCAATACCGCAGAGATTGGTGCTATACAGGGAATTGATGACTCGTCCTACTATTATGCAAATGGAGTTGGTGGTTTGAAGGTGCAGAGTGCTTTGAACTGTAACTATCCTATAGTGCAAAATTTGATTCTGGATAGTCTTCGGCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCATAAATGCTTCACACCTGCTGAGGGGATTTCATGGGGAGTACTTGTCTAGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCAGTACTCTCCAAGACTAAAATCATTGCAGATTGTTGGGATCCCCATGGCATGGTAGCAAAGGAAATTCGCTTTCCTCATTGGATGAGATGGGCTGAAATGAATACACATTTTTGTAATGATGTGAGGAACTTTTTAAGGGGTCAAAATCTTCTTAGCGACCTGGCAACAAGACTCTGTGGGAGTGGGGACATTTTTTCTGGTGGACGAGGCCCTGGATTCTCTTTTAATTACATTGCCAGGAACTTTGGAGTTTCTCTTGTGGACTTAGTTAGCTTCAGCAGTGTGGATGAATTAAGTTGGAATTGTGGAGCAGAAGGACCTACTAACAACACTGCTGTTCTTGAAAGACGACTCAAGCAAATCCGTAATTTCCTCTTCATCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAATGTGGCCAGTCTTCTGGTGGTTTTACTGCATATGATGGTATAAAGCCTTTCAGTTGGAGTGCTTTGAAAACAGGCTTTGGTAAACAAACCTCAGAATTCATTTTCTTTTTAAGTTCATTGAGAAAGAGGAGGAGCTATCTTCTTCAGAGGAGGAGCTTCTTAAAAGAAGAAAACATTGAATGGTATGGAAGTGATGGGGATCCACCAAGATGGGAAGACCCATCCTGCAAGTTCCTGGCAATGATTTTGAAGGCTGAAGTAACGGAGTTCTTAGAGAGCTCTGTATCTTCTGATATATCCGGGGATCTATTTATTGCTTTCAATGCAACTGATCATCCAGAAACTGCAGTTTTACCCTTGCCTCCAGAAGGAATGTCATGGTACCGTTTAGTTGACACGGCTCTTCCATTTCCCGGCTTTTTCTCGACCAGTGGTGAAGTTGTCCCTGAGCAGACAGAAGGTTTGTTTACTTATCAAGTGAAGTCTTACAGCTGCACTTTGTTTGAGGCAAATAACAGGACCATTTAA

Predicted protein sequences of Glyma19g33620

Limit To All Plant Sequences

>Glyma19g33620.2   sequence type=predicted peptide   gene model=Glyma19g33620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAILAPRFSFSVIPRNHHKLKRSFSHKPFIQRKQLWHQLGLQSLVSPFSLNPTSSKLCATSRLSIEETEQQIGTLTRPEDLKGSLAYLFRTETGGGLVKVHVTRRNDRYSVYIEISSLDISGGVGEALLLCWGVYRSDSSCFVDLDTIGLSENAAMGMNVSPLVQNSDGKFAIELEFDAKHVPLYLSFFLMSSLDSGLEIRSHRRTNFCMPVGSLPGYPCPLGVSYSPDGSVNFSIFSRHAESVVLCLYDENGVEKPALELDLDPYVNRTGDIWHVSFESAKGFVSYGYRCRRGVLKKNKDDGFAEHVVLDPYAKIVGNSYPDGVGLVKNLGCLRKEPFFDWGGDRHPDLSMEKLVVYRLNVKRFTQHESSQLPSGLAGTFTGLAKKVQHFKDLGVNAVLLEPVFTFDEKKGPYFPCHFFSLMHIYGPSGGPVSAIAAMKEMVKTMHANGIEVLVEVVFSNTAEIGAIQGIDDSSYYYANGVGGLKVQSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFINASHLLRGFHGEYLSRPPLVEAIAFDPVLSKTKIIADCWDPHGMVAKEIRFPHWMRWAEMNTHFCNDVRNFLRGQNLLSDLATRLCGSGDIFSGGRGPGFSFNYIARNFGVSLVDLVSFSSVDELSWNCGAEGPTNNTAVLERRLKQIRNFLFILFVSLGVPVLNMGDECGQSSGGFTAYDGIKPFSWSALKTGFGKQTSEFIFFLSSLRKRRSYLLQRRSFLKEENIEWYGSDGDPPRWEDPSCKFLAMILKAEVTEFLESSVSSDISGDLFIAFNATDHPETAVLPLPPEGMSWYRLVDTALPFPGFFSTSGEVVPEQTEGLFTYQVKSYSCTLFEANNRTI*

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