Glyma19g33611 - SoyBase

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Report for Sequence Feature Glyma19g33611

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41187574
stop:	41193602
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33611

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G48110	AT	Annotation by Michelle Graham. TAIR10: reduced epidermal fluorescence 4 \| chr2:19673370-19679494 FORWARD LENGTH=1275	SoyBase	E_val: 5.00E-64	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:2000762	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
UniRef100_F4IN69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 33B n=1 Tax=Arabidopsis thaliana RepID=MD33B_ARATH	SoyBase	E_val: 2.00E-61	ISS
UniRef100_I1JNR8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JNR8_SOYBN	SoyBase	E_val: 1.00E-81	ISS

Expression Patterns of Glyma19g33611

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g33611 not represented in the dataset	Glyma19g33611 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g33611 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g153600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33611

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g33611

Limit To All Plant Sequences

>Glyma19g33611.2   sequence type=transcript   gene model=Glyma19g33611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCAACCAAGGGTTAGAGAGAAAATTCTATGCACGGAAGAGGATAACGTCTCAGAGTAATCTTGGAGGTCCCAGCAAACCCCCAGGTTTTGCTTGATTTTAAGCAGTGAACAAGCAAGAACGATCACAGGAGGGCCACAGTGGGAAGGCAGATGGCTGTTAGACACAACTACCGAGGGCCTCAAAGATCTAGCCGATTTTCTTCCAGCTTCTTTGGTTACCATTGCAAGCTACTTTTCAGCTGAAGATACGCGGGACATATGGAAGCCAGCTTTTATGGATGGAACTGACTGGATTAGCCCTGCTGCAAATTTAGCTCTTGTTGAGCAACAGATAAAGAAAATCTTAGCAGCCACAGGTGTCGATGTCCCAAGCCTTGATATAGCTACACTTCCTTTGCCTTTGGCAGCTTTTGTAAGCCTCACAATTACATATAAACTTGACAAAGCCACTGAACGATTCCTTGCACTGATTGCCCCTGCTGGGAGTGCCCTTGCTTCTGGTTGTTCCTGGCCCTCCTTGCCCATTGTGACGTCTTTGTGGATCCAGATGGTGAAGCGTTGGAGTAACTACTTCGTGCTCTCTGCTTCCAGCACTGTTTTCCACCACAACAAGGATGCTATAGTTCAACTACTTAAAAGTTGCTTCACATCCACCCTTGGGCTAGGCTATGGCAGCATTTATAATAACAGTGGTGCCAGTGCCCTCCTCGGTGTACCGGTCTATTGGAGATATCACGTTATTGATTGAAGAAATTGTGCCTATTTTAATGCTTTCAGTTACAGACATTGCAAGTAGTGATTTGATGCCCAAGAGAGTTGTAAGAAAACCAAGTTTGGGAACAAATAAGTTTCTCTTGGTGGCCTTAAAGCAAGGGTTTGGGCTGCCTTACCCTTGGGTCGGCCCTGAGCTTGATGGTGGGTCGAGCTCCATCATGGGTCCGGGTAAATGAGTAATTGTTCGGGTAAAAAAAGCAGAGAACTTGTTCACGGGTTTGCCATGGTAGCAAGGTGGGGTTCAAGGTGATGTTACGGTTGCAAACATGGATATTGTGGAGGTGCCCGGAGATGGCGACAGATGACGATGGTTGTAACTTGTAGTGTTATTTTTTTAACATCTGAAATTCTGACTTCCAAGCTGCTAGATTCTTGAAGTCTTCAATTTTCTTTTTTGTCTATCAACATATATCTTGGCTCCAAATGTTTGGGGC

>Glyma19g33611.3   sequence type=transcript   gene model=Glyma19g33611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGCAGTTTAAATTACTCAAATTCTTATGTGTCCAAATTTAATTCACCGGTTATTCTTTTAAAATAAGAAGTTCCTTGTTCAAAAAAAAATTTAATTAATGTCATGTCCAAATCACAAACAATTCCTATCTTTTTATCACCTTGAGGACTCCCCCACTACTATCGTGGAACAATTTAAAAAGTTTACACATTATTTACCACAAGAAAATTTTATTCTCACTTTAAAATGCAATCTTAATTTCAATCTTAATGGAATAAAGAGTGATATATCTTGATATTGATATACCCCGGAACAATATTGATAGTGAACCACATATATTAGGGAAATTTGCACTGGGTTGTATTGTAATAGTGATTTTTCAAACCTTGTTTAGTATGCTTGCTGTGTAATTTGATTTTCACGTTCTTTGTTTTCTCAGGCCTCAAAGATCTAGCCGATTTTCTTCCAGCTTCTTTGGTTACCATTGCAAGCTACTTTTCAGCTGAAGATACGCGGGACATATGGAAGCCAGCTTTTATGGATGGAACTGACTGGATTAGCCCTGCTGCAAATTTAGCTCTTGTTGAGCAACAGATAAAGAAAATCTTAGCAGCCACAGGTGTCGATGTCCCAAGCCTTGATATAGCTACACTTCCTTTGCCTTTGGCAGCTTTTGTAAGCCTCACAATTACATATAAACTTGACAAAGCCACTGAACGATTCCTTGCACTGATTGCCCCTGCTGGGAGTGCCCTTGCTTCTGGTTGTTCCTGGCCCTCCTTGCCCATTGTGACGTCTTTGTGGATCCAGATGGTGAAGCGTTGGAGTAACTACTTCGTGCTCTCTGCTTCCAGCACTGTTTTCCACCACAACAAGGATGCTATAGTTCAACTACTTAAAAGTTGCTTCACATCCACCCTTGGGCTAGGCTATGGCAGCATTTATAATAACAGTGGTGCCAGTGCCCTCCTCGGTGTACCGGTCTATTGGAGATATCACGTTATTGATTGAAGAAATTGTGCCTATTTTAATGCTTTCAGTTACAGACATTGCAAGTAGTGATTTGATGCCCAAGAGAGTTGTAAGAAAACCAAGTTTGGGAACAAATAAGTTTCTCTTGGTGGCCTTAAAGCAAGGGTTTGGGCTGCCTTACCCTTGGGTCGGCCCTGAGCTTGATGGTGGGTCGAGCTCCATCATGGGTCCGGGTAAATGAGTAATTGTTCGGGTAAAAAAAGCAGAGAACTTGTTCACGGGTTTGCCATGGTAGCAAGGTGGGGTTCAAGGTGATGTTACGGTTGCAAACATGGATATTGTGGAGGTGCCCGGAGATGGCGACAGATGACGATGGTTGTAACTTGTAGTGTTATTTTTTTAACATCTGAAATTCTGACTTCCAAGCTGCTAGATTCTTGAAGTCTTCAATTTTCTTTTTTGTCTATCAACATATATCTTGGCTCCAAATGTTTGGGGCACATTAACAAGGAACTCTTCCTAAATGAGGATGTTGTCGGTGCATCCGGATGCTTCCATCTATAAATATAAATAGTGAAATGCTTCTTAGTTCCAGAAGTTGAACCTTGAGACTAAATTATTGTTATTCATAATATGAAATAGTGACATTGTAGAATGATGAATTCAATTAAAAAAAAACGGTAATATGCATTCAATGATACAAGAGAAACTTGAAGTTAAAGTAGGCTGGGATTTAAGAATCCACCGGTTATAACACTTGAGTTTCCACAAACATAAAAACTTTTTGTTGGCAATATAATGTGTATATGCTAGCTTAGCTCTTGTGGGTTTCTGAAAGTATTAAGAAATTATGCTTTCAAAATGACTGTACAATATATGCTGTTAAACTTAATTTGCCTACCTATTTCGTTATGTTGCTTATATAGTTATATATATACATGTTCTTCGTTGTCCATTTGTCCTCCTGCAGTGAAGAAAATTTCTCAGATATTGGAGAGAAAAAAAACTAGAAGCTGCCATTGCAGTCTGCTGCCTTCTCCAGGCGCCTCTGGCAACCACTACATTTGCAACCACCGCACTGCCTTGAACCCCCATTATCATCACCATCGCACTGTGAGAAGCTCTTCTTTTTTCTTTGCCCAAGCTATTGCAGCAACAGCAAGCAACAAAAGTATGGAAATGGCCATGTGTCAAAATTTGATGCATTAAATTAATCAAATGGCTTAAAATCACTGAAAGGCAGGGTGACTTTCCCGCCTCAAAGTCACC

Coding sequences of Glyma19g33611

Limit To All Plant Sequences

>Glyma19g33611.1   sequence type=CDS   gene model=Glyma19g33611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGAACTGACTGGATTAGCCCTGCTGCAAATTTAGCTCTTGTTGAGCAACAGATAAAGAAAATCTTAGCAGCCACAGGTGTCGATGTCCCAAGCCTTGATATAGATGGGAATTCTCCAGCTACACTTCCTTTGCCTTTGGCAGCTTTTGTAAGCCTCACAATTACATATAAACTTGACAAAGCCACTGAACGATTCCTTGCACTGATTGCCCCTGCTGGGAGTGCCCTTGCTTCTGGTTGTTCCTGGCCCTCCTTGCCCATTGTGACGTCTTTGTGGATCCAGATGGTGAAGCGTTGGAGTAACTACTTCGTGCTCTCTGCTTCCAGCACTGTTTTCCACCACAACAAGGATGCTATAGTTCAACTACTTAAAAGTTGCTTCACATCCACCCTTGGGCTAGGCTATGGCAGCATTTATAATAACAGTGGTGCCAGTGCCCTCCTCGGTGTACCGGTCTATTGGAGATATCACGTTATTGATTGA

>Glyma19g33611.2   sequence type=CDS   gene model=Glyma19g33611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGAACTGACTGGATTAGCCCTGCTGCAAATTTAGCTCTTGTTGAGCAACAGATAAAGAAAATCTTAGCAGCCACAGGTGTCGATGTCCCAAGCCTTGATATAGCTACACTTCCTTTGCCTTTGGCAGCTTTTGTAAGCCTCACAATTACATATAAACTTGACAAAGCCACTGAACGATTCCTTGCACTGATTGCCCCTGCTGGGAGTGCCCTTGCTTCTGGTTGTTCCTGGCCCTCCTTGCCCATTGTGACGTCTTTGTGGATCCAGATGGTGAAGCGTTGGAGTAACTACTTCGTGCTCTCTGCTTCCAGCACTGTTTTCCACCACAACAAGGATGCTATAGTTCAACTACTTAAAAGTTGCTTCACATCCACCCTTGGGCTAGGCTATGGCAGCATTTATAATAACAGTGGTGCCAGTGCCCTCCTCGGTGTACCGGTCTATTGGAGATATCACGTTATTGATTGA

>Glyma19g33611.3   sequence type=CDS   gene model=Glyma19g33611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGAACTGACTGGATTAGCCCTGCTGCAAATTTAGCTCTTGTTGAGCAACAGATAAAGAAAATCTTAGCAGCCACAGGTGTCGATGTCCCAAGCCTTGATATAGCTACACTTCCTTTGCCTTTGGCAGCTTTTGTAAGCCTCACAATTACATATAAACTTGACAAAGCCACTGAACGATTCCTTGCACTGATTGCCCCTGCTGGGAGTGCCCTTGCTTCTGGTTGTTCCTGGCCCTCCTTGCCCATTGTGACGTCTTTGTGGATCCAGATGGTGAAGCGTTGGAGTAACTACTTCGTGCTCTCTGCTTCCAGCACTGTTTTCCACCACAACAAGGATGCTATAGTTCAACTACTTAAAAGTTGCTTCACATCCACCCTTGGGCTAGGCTATGGCAGCATTTATAATAACAGTGGTGCCAGTGCCCTCCTCGGTGTACCGGTCTATTGGAGATATCACGTTATTGATTGA

Predicted protein sequences of Glyma19g33611

Limit To All Plant Sequences

>Glyma19g33611.1   sequence type=predicted peptide   gene model=Glyma19g33611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGTDWISPAANLALVEQQIKKILAATGVDVPSLDIDGNSPATLPLPLAAFVSLTITYKLDKATERFLALIAPAGSALASGCSWPSLPIVTSLWIQMVKRWSNYFVLSASSTVFHHNKDAIVQLLKSCFTSTLGLGYGSIYNNSGASALLGVPVYWRYHVID*

>Glyma19g33611.2   sequence type=predicted peptide   gene model=Glyma19g33611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGTDWISPAANLALVEQQIKKILAATGVDVPSLDIATLPLPLAAFVSLTITYKLDKATERFLALIAPAGSALASGCSWPSLPIVTSLWIQMVKRWSNYFVLSASSTVFHHNKDAIVQLLKSCFTSTLGLGYGSIYNNSGASALLGVPVYWRYHVID*

>Glyma19g33611.3   sequence type=predicted peptide   gene model=Glyma19g33611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGTDWISPAANLALVEQQIKKILAATGVDVPSLDIATLPLPLAAFVSLTITYKLDKATERFLALIAPAGSALASGCSWPSLPIVTSLWIQMVKRWSNYFVLSASSTVFHHNKDAIVQLLKSCFTSTLGLGYGSIYNNSGASALLGVPVYWRYHVID*

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