SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02940 | AT | Annotation by Michelle Graham. TAIR10: oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:1306658-1310699 FORWARD LENGTH=569 | SoyBase | E_val: 0 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016706 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | SoyBase | N/A | ISS |
| KOG4176 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | ISS | |
| UniRef100_Q9ZT92 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase, 2OG-Fe(II) oxygenase family protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZT92_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EFF0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EFF0 related cluster n=1 Tax=unknown RepID=UPI000233EFF0 | SoyBase | E_val: 0 | ISS |
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Glyma19g33540 not represented in the dataset |
Glyma19g33540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g30640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g152900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g33540.1 sequence type=CDS gene model=Glyma19g33540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCTGTCCCAGCATCGCGGACCGATCCACCACCGGCAATGGTGCAGCCGCCGCTGCTCGTCTCTGACCCCTTCGCCAAGGACGCCATTCTCGCCTGGTTCCACGGCGAGTTCGCCGCCGCCAACGCCATCATCGACGCCCTCTGCGGCCACCTCGCGCATCTCGCCGCCGCATCCTCAGACTACGACGCCGCTTTCGCCGCCATCCACCGCCGCCGCCTCAACTGGATCCCCGTCATCCAGATGCAGAAGTATCATTCCATCGCCGACGTCACTCTCGAGCTCCGCAGAGTCGCCGAGAAGAAAAGCGAGCACGAAGCAGCGAAAAAAAGCGAGAGCAGCTTCGAAGAGGAAGGGAAATTGGAGAAGGAAACGGCGGAAAACGGCGGAAACGACGGTGATGACGATGCCGCGCCGGAGTATGATTCGCCGGACAGTGAAATTACCGATTCAGGATCTCAGGAAATGCAACCCAGTGTGATGAACAACAACATATGTTCTAATCATGAAGAATGCGAAGGACGTTCTTCACAGATAAAGCTGACAAAAGGTTTCACAGCAAAGGAGTCCGTGAAGGGGCATATGGTGAATGTTGTGAAAGGATTAAAGTTGTATGAGGATGTTTTCTCTGAATCAGAAATCTGCAAGCTGACTGATTTTGTGAAGGAGATTCATGCTGCTGCCCAGAACGGGGAGCTCTCAGGTGAAACTTTTATACTGTTCAACAAACAGATGAAGGGAAACAAGAGAGAGCTGATTCAGTTGGGTGTTCCGATATTTAGACAGATAAAGGACGATAACAAAAGCAATATAGAACCGATTCCAGCACTTCTTCATGATGTCATTGATCACCTTATTCAATGGAAATTAATTCCAGAGTACAAAAGGCCAAATGGTTGTATCATCAACTTTTTTGAAGAGGGGGAATTTTCTCAGCCATTCCTGAAACCACCGCATTTGGACCAACCTCTATCCACACTTCTTCTGTCTGAATCAACTATGGCTTTTGGGCGTATCCTTATGAGTGAAAATGATGGGAACTACAAGGGTCCACTCATGCTCTCATTGAAGGAGGGGTCTCTTTTAGTGATGAGAGGAAACAGTGCTGACATGGCAAGGCACGTAATGTGTCCATCCCCTAACAGAAGGGTGAGCATTACCTTCTTTAGAGTGAGGCCAGACTCCAATCAATGCCAATCACCAACTCCCACCATGACAACTGCGATGACTCTTTGGCAACCTAGCATTGCTAGCCCATTTACTTTGCCAAACGGACCTCTAAGTGGCTATGAGGCTATGAATATGATGCCCCAGTTGGGAATACTTAGTGCTCCAATGGTCATGTTAGCTCCTATGCGCCCTATGGCAGCAAACACTCACAAACTTCCTCGAGGTGGAACTGGGGTTTTCTTGCCTTGGAAGGGGTCAGCCAGAAAACATGCAAGGCATCTTCCACCGCGTGCTCAAAAAGGACGCCTTATGGAATTACCCTCCCCAGTTGAATCACACACGGGAGAGTCCATTTCTGAACCCAGCATTGCTGTTGAAGGATAG
>Glyma19g33540.1 sequence type=predicted peptide gene model=Glyma19g33540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAVPASRTDPPPAMVQPPLLVSDPFAKDAILAWFHGEFAAANAIIDALCGHLAHLAAASSDYDAAFAAIHRRRLNWIPVIQMQKYHSIADVTLELRRVAEKKSEHEAAKKSESSFEEEGKLEKETAENGGNDGDDDAAPEYDSPDSEITDSGSQEMQPSVMNNNICSNHEECEGRSSQIKLTKGFTAKESVKGHMVNVVKGLKLYEDVFSESEICKLTDFVKEIHAAAQNGELSGETFILFNKQMKGNKRELIQLGVPIFRQIKDDNKSNIEPIPALLHDVIDHLIQWKLIPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPLSTLLLSESTMAFGRILMSENDGNYKGPLMLSLKEGSLLVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQSPTPTMTTAMTLWQPSIASPFTLPNGPLSGYEAMNMMPQLGILSAPMVMLAPMRPMAANTHKLPRGGTGVFLPWKGSARKHARHLPPRAQKGRLMELPSPVESHTGESISEPSIAVEG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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