Glyma19g33530 - SoyBase

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Report for Sequence Feature Glyma19g33530

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41115915
stop:	41117619
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03350	AT	Annotation by Michelle Graham. TAIR10: BSD domain-containing protein \| chr1:822834-824246 REVERSE LENGTH=470	SoyBase	E_val: 7.00E-70	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2690	KOG	Uncharacterized conserved protein, contains BSD domain	JGI		ISS
PTHR16019	Panther	SYNAPSE-ASSOCIATED PROTEIN	JGI		ISS
PF03909	PFAM	BSD domain	JGI		ISS
UniRef100_B9SFN4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Synapse-associated protein, putative n=1 Tax=Ricinus communis RepID=B9SFN4_RICCO	SoyBase	E_val: 1.00E-82	ISS
UniRef100_UPI000233EFEF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFEF related cluster n=1 Tax=unknown RepID=UPI000233EFEF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33530

Paralog	Evidence	Comments
Glyma03g30630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g152800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33530

Limit To All Plant Sequences

>Glyma19g33530.2   sequence type=CDS   gene model=Glyma19g33530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTATCTTCATTTTAGCCCCTTATACTCCAACCACTAGAAGGCATCGTCGTCGTCAAAAGAACCGAGTCGCGATTCCTCCACCGGCGAAATCGGAATCCATCATCGAGACCTACCGTCGCGACCTGCAGGAGTTCGGCACCGGTTTGAAGAAGGAGATTGAGGTCGCTCACCGCTCCCTCGAGACGGTGGGCCACGTCATCGACCAATTCGGAAACACCGTCGCCAAAGGCACCGCTCACATCACATCATATCTCGATTCCGATAATAATAATAACAGAAACAACCCCGGCACCAAAGAAAAAAAGAGCTTCATTTCGAAGCGCTATAGTAGGTTTGACTCACAGGTTCGTGCAATTCAGAGTGACGTTAGCACTTACACCGAAGTGCCGGAGGATTCGGATGAGTATAATGAGTGGAAATCGAGGTTTTCGTTGGAAGAAAAGAGGGACGAAATGGAAGGATTTTTAAACGATAATGCGGCTATGGAGAGTGTTTACAAGAGGGTTGTTCCCAGTGTTGTTGACCATGACACGTTTTGGTGTAGGTATTATTATAGAGTTTACAGGCTCAAGAAAGCTGAGGATGTGAGGGCGAGGCTCGTGAGGAGAATGTCGAGGGACGAGGAGGAGTTGAGTTGGGATGTTGAAGAAGAAGATGAGAATAAGGGAAAAGAAGGAGATTCTGTGTTGCATGGGGATGGAACAAATAGATTGAATGTGGAAGAGATGCATAAGTCTGCTGAGGAGGGGTCTAAGGAAGAAAAGAGAGGTGATTTATTGCAAAGCAAGGGAGATGAGTCTGTTGAAGAATCAAAGGCTGGCAAGAACAAAGAGGTTGTTGAGAAGATGAGTGATGGAACTAAGAAAAATTCATTGGTTGCAAATAAGCACTCGAAGAATGAGAAGGAGGAGGAGGAGGACCTTGAGTGGGATGAGATAGAGGATCTTAGTAGAATTGATGAAGAGAAGGCAACTCGGATGGGTAGCCATACCAAAGTTGATTTGCGGAAGCGCCGCCTCAGTGCTGCTCAAGAGCAAGAAGAAGAAGACTTG

Predicted protein sequences of Glyma19g33530

Limit To All Plant Sequences

>Glyma19g33530.2   sequence type=predicted peptide   gene model=Glyma19g33530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCIFILAPYTPTTRRHRRRQKNRVAIPPPAKSESIIETYRRDLQEFGTGLKKEIEVAHRSLETVGHVIDQFGNTVAKGTAHITSYLDSDNNNNRNNPGTKEKKSFISKRYSRFDSQVRAIQSDVSTYTEVPEDSDEYNEWKSRFSLEEKRDEMEGFLNDNAAMESVYKRVVPSVVDHDTFWCRYYYRVYRLKKAEDVRARLVRRMSRDEEELSWDVEEEDENKGKEGDSVLHGDGTNRLNVEEMHKSAEEGSKEEKRGDLLQSKGDESVEESKAGKNKEVVEKMSDGTKKNSLVANKHSKNEKEEEEDLEWDEIEDLSRIDEEKATRMGSHTKVDLRKRRLSAAQEQEEEDL

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