Report for Sequence Feature Glyma19g33520
Feature Type: gene_model
Chromosome: Gm19
Start: 41111357
stop: 41113646
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g33520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G03360 AT
Annotation by Michelle Graham. TAIR10: ribosomal RNA processing 4 | chr1:824653-826179 FORWARD LENGTH=322
SoyBase E_val: 4.00E-159 ISS
GO:0009561 GO-bp
Annotation by Michelle Graham. GO Biological Process: megagametogenesis
SoyBase N/A ISS
GO:0004527 GO-mf
Annotation by Michelle Graham. GO Molecular Function: exonuclease activity
SoyBase N/A ISS
KOG3013
KOG
Exosomal 3'-5' exoribonuclease complex, subunit Rrp4
JGI ISS
PTHR21321 Panther
PNAS-3 RELATED
JGI ISS
PTHR21321:SF2 Panther
RRP4
JGI ISS
UniRef100_B7FL19 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease RRP4 n=1 Tax=Medicago truncatula RepID=B7FL19_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N9E1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N9E1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g33520
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g33520
Paralog Evidence Comments
Glyma03g30620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g33520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g152700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g33520
Coding sequences of Glyma19g33520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g33520.1 sequence type=CDS gene model=Glyma19g33520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGAGAGATACAGTTACCCTTAAGCCAAACACAGAAGGTTCGTCTTCAGAAGGCTCTGGAACAGTTAGAGTCTCTGTCAACGAAGGTGAATTCCGATGCTTCGGTAATCATCGCCGATTCCATCCACGTCAACCACGAAGATGGCGTCCTCAAGGGACACGGAACCGCCGACCTCAACGGCGAAGTCGTCGCCACCCTCTGCGGCGTCGTCGAGCGCGTCAACAAACTTGTCTACGTTCGCGCGTTACGCTCCAGGTATAAACCTGAGGTTGGTGACATTGTTATAGGGCGTGTTGTTGAGGTTGCTCAGAAGCGTTGGAGATTGGAGATAAATTACAATCAGGATGCAGTTTTGCTGCTCTCTTCTATGAACATGCCTGATGGTGTTCAGAGGCGGAGGACAGCTGTGGATGAGCTAAACATGCGCTGCATTTTCGAGGAGAATGATGTTGTTTGTGCTGAAGTTCGTGGTTTCCAGCATGATGGCTTACACCTTCAAGCAAGGAGTCGGAAATATGGAAAGCTTAATAGAGGTCAACTGCTTACTGTCCCACCTTATTTAGTGAAGAGACAAAAACAACATTTCCATCATCTTGAGGAGTTTGGTATTGATTTGATACTTGGCTGTAATGGATTCATATGGGTTGGGGAACATGTTGAAGCCAAAGATGACATGATAGAAGATCAAGTGAGCCAATCTGATTCACAAGTTTTATTCCCTAATAAAAATTGTGTCAGTCTTGAAGAACAAGAGAAAAATTATACAATATTGGAGACAAGAAAATACATATCCAGAGCTGCTAATGCTGTTAGAGTATTGTCAACCTTAGGCTTCAATATTACATTGGAAATCATCAAGGGAATTATTGATCTAAGCCTATCTATGAATCTTGATATACACGATATGCTTGGTTCTGAGTTTTGTGTTCTGGTTGCCGAAAAAGAGGCTGAAAGGAGAAGCTCAATGAAAAAAAGGCGGTAG
Predicted protein sequences of Glyma19g33520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g33520.1 sequence type=predicted peptide gene model=Glyma19g33520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MREIQLPLSQTQKVRLQKALEQLESLSTKVNSDASVIIADSIHVNHEDGVLKGHGTADLNGEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYNQDAVLLLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVLFPNKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLDIHDMLGSEFCVLVAEKEAERRSSMKKRR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
