Glyma19g33500 - SoyBase

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Report for Sequence Feature Glyma19g33500

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41097320
stop:	41100947
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G48030	AT	Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein \| chr2:19647834-19649988 REVERSE LENGTH=438	SoyBase	E_val: 6.00E-152	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_B9SFL5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, putative n=1 Tax=Ricinus communis RepID=B9SFL5_RICCO	SoyBase	E_val: 1.00E-169	ISS
UniRef100_UPI000233EFEE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFEE related cluster n=1 Tax=unknown RepID=UPI000233EFEE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33500

Paralog	Evidence	Comments
Glyma03g30600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g152500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g33500

Limit To All Plant Sequences

>Glyma19g33500.2   sequence type=transcript   gene model=Glyma19g33500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCATAAAAATAAGAAAACATAGAACTTAGTCTCTAATATCACACTCACCCATGCTTTGAAGCACAAGCGAGACTTGAAAACTCTATCTCATTTCTCCACCATGCTTAAACTCCTCAACAATAACCTCCGTCGCCTCAGCTCCCACCTCCGCTGGTCCTCACGGCGTCGTTTTAAGCCCAAGCTACGCTTCGGGGAGGGGGCGCTCTCGAACCTCACACCGAACCTTCTCCTCCTCCAACGAAACCAATACGAATCGCAACGTTCAACGCCGCATTCTTCTCCATGGCACCGGTGCTTCCCGAAGCAGACGACAAAACCACCACCTCCTCGGACGACAACATAGGACGAGCGAAGTCACCCTACGATCGACCGCGGAGCATTCTGAAACAGTCGCAGCCTCCTTTGCTGGGGAAGTCAAAGCTGAGAGTGTCCATCAACTTACCCGACAACGAGATTTCGCTGCGCCAAACGAGCTTCTCCGAACACGAGAGATCGAAATTAGGGTCGTTGTCGTGGTCGTGGAGTTTCGCCGAGGGAGGAAAAGAGAGGCAGAGAAGAACGGTGGTTGAAGTTCTGAGAGAGCTAAACGCCGACGTTTTGGGCTTGCAAGACGTGAAGGCGGAGGAAGAGAACGGGATGAAGCCTTTGTCGGATTTGGCGAGTTCTCTGGGAATGAATTACGTCTTCGCCGAAAGCTGGGCTCCTCAATACGGCAACGCCGTTTTGTCCAAGTGGCCCATTAAACGCTGGAAGCTACAGAAAATCTTTGATCACAACGATTACAGGAATGTTCTGAAGGCCACTATCGATGTACCCCAAGAAGGTGAACTCCACTTTTACTGCACCCACCTTGATCATCTTGATGAGAATTGGAGAATGAAACAGATAAATGCAATAATTCAATCTAATGATGAGCCACACATTTTAGCTGGATGCCTTAATTCGCTCAATGAATCAGATTATTCCGAAGAAAGATGGACAGATATTGTAAAGTACTATGAAGAGATGGGAAAGCCAACACCGAAGGTTGAAGTGATGAAACATCTCAAGAGCAGACACTACACGGATGCTAAGGACTTTTCAGGGGAATGTGAGCCTGTTGTCATGATTGCCAAAGGACAAAGTACAACAACAATCTCTTAAGCTTTAATTTTACGAAAGTTCAATTTAACCCTTTGGCTTTTGGAATTTCAACTTTGTTCTTATACTAAGTTCTCTAAAATTAAATTATAATTATTATGCAGGTGTCCAAGGGACATGTAAGTATGGAACTAGGGTTGATTACATATTATCTTCCTCAGATTCTCCATATAAATTCGTTACTGGATCCTACTTAGTCCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTGAAAGTTGATGTGGTAAAAGTAAATAGTAATCCTCAGGAAAATCTGACAAAGAAGCAGGGACAACCAAGACAGAAAGTTGCAAGAATAAAACCAAGTCCATCGAAATGTATATGGAAAACACACACCGGAGATATAGATTGAATTATTTTCTTTCCTCATTTTTTTTTATTAATGCGAATATACTTTGGAGATGGAGCAGTTAATTTTTTTCCTGCTTTCTAATTGTGTTCTGTATATTCTTCAAAAGAATTATATGAAATAAGCGTGAGATATGACAAGTTACACATTTGTTTTTTTAATTTTTGGGATTTGCTC

Coding sequences of Glyma19g33500

Limit To All Plant Sequences

>Glyma19g33500.1   sequence type=CDS   gene model=Glyma19g33500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCGGTGCTTCCCGAAGCAGACGACAAAACCACCACCTCCTCGGACGACAACATAGGACGAGCGAAGTCACCCTACGATCGACCGCGGAGCATTCTGAAACAGTCGCAGCCTCCTTTGCTGGGGAAGTCAAAGCTGAGAGTGTCCATCAACTTACCCGACAACGAGATTTCGCTGCGCCAAACGAGCTTCTCCGAACACGAGAGATCGAAATTAGGGTCGTTGTCGTGGTCGTGGAGTTTCGCCGAGGGAGGAAAAGAGAGGCAGAGAAGAACGGTGGTTGAAGTTCTGAGAGAGCTAAACGCCGACGTTTTGGGCTTGCAAGACGTGAAGGCGGAGGAAGAGAACGGGATGAAGCCTTTGTCGGATTTGGCGAGTTCTCTGGGAATGAATTACGTCTTCGCCGAAAGCTGGGCTCCTCAATACGGCAACGCCGTTTTGTCCAAGTGGCCCATTAAACGCTGGAAGCTACAGAAAATCTTTGATCACAACGATTACAGGAATGTTCTGAAGGCCACTATCGATGTACCCCAAGAAGGTGAACTCCACTTTTACTGCACCCACCTTGATCATCTTGATGAGAATTGGAGAATGAAACAGATAAATGCAATAATTCAATCTAATGATGAGCCACACATTTTAGCTGGATGCCTTAATTCGCTCAATGAATCAGATTATTCCGAAGAAAGATGGACAGATATTGTAAAGTACTATGAAGAGATGGGAAAGCCAACACCGAAGGTTGAAGTGATGAAACATCTCAAGAGCAGACACTACACGGATGCTAAGGACTTTTCAGGGGAATGTGAGCCTGTTGTCATGATTGCCAAAGGACAAAGTGTCCAAGGGACATGTAAGTATGGAACTAGGGTTGATTACATATTATCTTCCTCAGATTCTCCATATAAATTCGTTACTGGATCCTACTTAGTCCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTGAAAGTTGATGTGGTAAAAGTAAATAGTAATCCTCAGGAAAATCTGACAAAGAAGCAGGGACAACCAAGACAGAAAGTTGCAAGAATAAAACCAAGTCCATCGAAATGTATATGGAAAACACACACCGGAGATATAGATTGA

>Glyma19g33500.2   sequence type=CDS   gene model=Glyma19g33500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCGGTGCTTCCCGAAGCAGACGACAAAACCACCACCTCCTCGGACGACAACATAGGACGAGCGAAGTCACCCTACGATCGACCGCGGAGCATTCTGAAACAGTCGCAGCCTCCTTTGCTGGGGAAGTCAAAGCTGAGAGTGTCCATCAACTTACCCGACAACGAGATTTCGCTGCGCCAAACGAGCTTCTCCGAACACGAGAGATCGAAATTAGGGTCGTTGTCGTGGTCGTGGAGTTTCGCCGAGGGAGGAAAAGAGAGGCAGAGAAGAACGGTGGTTGAAGTTCTGAGAGAGCTAAACGCCGACGTTTTGGGCTTGCAAGACGTGAAGGCGGAGGAAGAGAACGGGATGAAGCCTTTGTCGGATTTGGCGAGTTCTCTGGGAATGAATTACGTCTTCGCCGAAAGCTGGGCTCCTCAATACGGCAACGCCGTTTTGTCCAAGTGGCCCATTAAACGCTGGAAGCTACAGAAAATCTTTGATCACAACGATTACAGGAATGTTCTGAAGGCCACTATCGATGTACCCCAAGAAGGTGAACTCCACTTTTACTGCACCCACCTTGATCATCTTGATGAGAATTGGAGAATGAAACAGATAAATGCAATAATTCAATCTAATGATGAGCCACACATTTTAGCTGGATGCCTTAATTCGCTCAATGAATCAGATTATTCCGAAGAAAGATGGACAGATATTGTAAAGTACTATGAAGAGATGGGAAAGCCAACACCGAAGGTTGAAGTGATGAAACATCTCAAGAGCAGACACTACACGGATGCTAAGGACTTTTCAGGGGAATGTGAGCCTGTTGTCATGATTGCCAAAGGACAAAGTACAACAACAATCTCTTAA

Predicted protein sequences of Glyma19g33500

Limit To All Plant Sequences

>Glyma19g33500.1   sequence type=predicted peptide   gene model=Glyma19g33500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPVLPEADDKTTTSSDDNIGRAKSPYDRPRSILKQSQPPLLGKSKLRVSINLPDNEISLRQTSFSEHERSKLGSLSWSWSFAEGGKERQRRTVVEVLRELNADVLGLQDVKAEEENGMKPLSDLASSLGMNYVFAESWAPQYGNAVLSKWPIKRWKLQKIFDHNDYRNVLKATIDVPQEGELHFYCTHLDHLDENWRMKQINAIIQSNDEPHILAGCLNSLNESDYSEERWTDIVKYYEEMGKPTPKVEVMKHLKSRHYTDAKDFSGECEPVVMIAKGQSVQGTCKYGTRVDYILSSSDSPYKFVTGSYLVLSSKGTSDHHIVKVDVVKVNSNPQENLTKKQGQPRQKVARIKPSPSKCIWKTHTGDID*

>Glyma19g33500.2   sequence type=predicted peptide   gene model=Glyma19g33500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPVLPEADDKTTTSSDDNIGRAKSPYDRPRSILKQSQPPLLGKSKLRVSINLPDNEISLRQTSFSEHERSKLGSLSWSWSFAEGGKERQRRTVVEVLRELNADVLGLQDVKAEEENGMKPLSDLASSLGMNYVFAESWAPQYGNAVLSKWPIKRWKLQKIFDHNDYRNVLKATIDVPQEGELHFYCTHLDHLDENWRMKQINAIIQSNDEPHILAGCLNSLNESDYSEERWTDIVKYYEEMGKPTPKVEVMKHLKSRHYTDAKDFSGECEPVVMIAKGQSTTTIS*

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