SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G48020 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr2:19644441-19647007 FORWARD LENGTH=463 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
| GO:0015144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0022857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG0254 | KOG | Predicted transporter (major facilitator superfamily) | JGI | ISS | |
| PTHR24063 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24063:SF74 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00083 | PFAM | Sugar (and other) transporter | JGI | ISS | |
| UniRef100_B9SFL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9SFL0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N9D7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9D7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g33480 not represented in the dataset |
Glyma19g33480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g30550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g152400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g33480.2 sequence type=transcript gene model=Glyma19g33480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGCATGCTTACTTGCATTTTCCCCCCTATACATACACCATCAATATTATATATTCCAAGGAACTAGTGATTGATTACGCATTGAAGCGAACATGGCGATCAAAGAAGATGTGGAGGAAGGCATGCAGAAAGGAGTCAGAGAGCCACTGGTGGTCCGTGCAAGCAAAGGGCATCCATGGATGGTTTACTTTACTACATTCGTTGCAGTGTGTGGTTCTTATGAATTTGGAGCTTGTGCGGGATATTCATCTCCCACTCAAGATGCTATCAGGAAGGATTTTAGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGATCCATCTTGACTTTTGGTGCAATGGTTGGCGCAATAACAAGTGGGCCTATAGCCGATTTTATTGGACGGAAAGGGGCAATGAGAGTGTCAAGTGCTTTCTGTGTCGCAGGGTGGCTAGTTATTTACTTTGCTGAGGGCCCAGTGTATTTGGACATTGGGAGGCTATCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTTGTAGCAGAAATTGCACCAAAAGAACTTCGAGGGACCCTGACTACCTTAAATCAGTTCATGATCACGGCTGCGGTGTCAGTGTCATTCACAATTGGAAACGTGTTTTCATGGAGGGTTTTAGCTATAATTGGCCTCATTCCCACTGCTGTATTGCTTTTGGGTCTGTTTTTCATTCCGGAGTCTCCTAGATGGCTGGCAAAGAGAGGACGTGAAAAAGATTTTGTGGCAGCACTGCAAATACTTCGTGGCAACGATGCTGATATATCTGAGGAGGCAGAGGAAATTCAGGATTATATAACTACTTTGGAGCGGCTCCCAAAATCCAGGCTGCTGGAATTGTTTCATAGAAGATATTTGCGCTCAGTCACTATTGGAATAGGCCTTATGGTCTGCCAGCAGTTTGGGGGAATCAATGGAATTTGCTTTTATACCAGCAGTATTTTTGAACTAGCAGGATTTTCTCCGACCATCGGGACTATTACATATGCCTGCCTTCAGATTGTGATCACAGGTCTTGGAGCAGCCTTAATAGATAAAGCTGGCAGGAAGCCCCTTCTTCTATTATCCGGATCGGGATTGGTCGCAGGATGCACATTTGTAGCAGTTGCATTCTATCTCAAGGTTCACGAGGTTGGTGTTGAGGCAGTCCCAGCACTTGCCGTAACTGGCATACTGGTCTACATAGGATCATTTTCAATAGGAATGGGAGCAATTCCTTGGGTTGTGATATATTTCCTGTCAATATTAAAGGGCTGGCAGGAAGTGTGGCCACATTAGTGAACTGGTTTGGTGCATGGTTATGTTCCTATACTTTCAACTTCTTCATGAGCTGGAGCTCCTATGGTACCTTCATCCTTTATGCAGCAATTAATGCACTGGCTATATTGTTTATAATTGTTGCGGTGCCAGAAACCAAGGGGAAAAGCTTGGAACAATTACAAGCAGACATTAACTCATAGGAAGCAGGAGTTTTGTAATTTGCAGAACAATGGACAGTGGAAAAAGAAAAAGAAAAAACTGACAGCAGTTTCGTGATTGAATCATCACTATCCTTATTATTTGTCGTAGTTTTTCTTCTGTATTGATGATTAAATATGTTCTCAAGGTTTATAATTCACATCGGTTTTTCTTAATGTCAATGATTCATAAAATATACACCAGGGAGCAATGTAAAATTTGTGGTTACATTTCAGCTCTGCAAAGAAAAGAAAAATATGTTATAGCATTCGAAAATCTTACATTTATTGAAATTATCTGATTTATAAGTAATTGATTTACAA
>Glyma19g33480.1 sequence type=CDS gene model=Glyma19g33480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGATCAAAGAAGATGTGGAGGAAGGCATGCAGAAAGGAGTCAGAGAGCCACTGGTGGTCCGTGCAAGCAAAGGGCATCCATGGATGGTTTACTTTACTACATTCGTTGCAGTGTGTGGTTCTTATGAATTTGGAGCTTGTGCGGGATATTCATCTCCCACTCAAGATGCTATCAGGAAGGATTTTAGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGATCCATCTTGACTTTTGGTGCAATGGTTGGCGCAATAACAAGTGGGCCTATAGCCGATTTTATTGGACGGAAAGGGGCAATGAGAGTGTCAAGTGCTTTCTGTGTCGCAGGGTGGCTAGTTATTTACTTTGCTGAGGGCCCAGTGTATTTGGACATTGGGAGGCTATCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTTGTAGCAGAAATTGCACCAAAAGAACTTCGAGGGACCCTGACTACCTTAAATCAGTTCATGATCACGGCTGCGGTGTCAGTGTCATTCACAATTGGAAACGTGTTTTCATGGAGGGTTTTAGCTATAATTGGCCTCATTCCCACTGCTGTATTGCTTTTGGGTCTGTTTTTCATTCCGGAGTCTCCTAGATGGCTGGCAAAGAGAGGACGTGAAAAAGATTTTGTGGCAGCACTGCAAATACTTCGTGGCAACGATGCTGATATATCTGAGGAGGCAGAGGAAATTCAGGATTATATAACTACTTTGGAGCGGCTCCCAAAATCCAGGCTGCTGGAATTGTTTCATAGAAGATATTTGCGCTCAGTCACTATTGGAATAGGCCTTATGGTCTGCCAGCAGTTTGGGGGAATCAATGGAATTTGCTTTTATACCAGCAGTATTTTTGAACTAGCAGGATTTTCTCCGACCATCGGGACTATTACATATGCCTGCCTTCAGATTGTGATCACAGGTCTTGGAGCAGCCTTAATAGATAAAGCTGGCAGGAAGCCCCTTCTTCTATTATCCGGATCGGGATTGGTCGCAGGATGCACATTTGTAGCAGTTGCATTCTATCTCAAGGTTCACGAGGTTGGTGTTGAGGCAGTCCCAGCACTTGCCGTAACTGGCATACTGGTCTACATAGGATCATTTTCAATAGGAATGGGAGCAATTCCTTGGGTTGTGATGTCTGAGATATTTCCTGTCAATATTAAAGGGCTGGCAGGAAGTGTGGCCACATTAGTGAACTGGTTTGGTGCATGGTTATGTTCCTATACTTTCAACTTCTTCATGAGCTGGAGCTCCTATGGTACCTTCATCCTTTATGCAGCAATTAATGCACTGGCTATATTGTTTATAATTGTTGCGGTGCCAGAAACCAAGGGGAAAAGCTTGGAACAATTACAAGCAGACATTAACTCATAG >Glyma19g33480.2 sequence type=CDS gene model=Glyma19g33480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGATCAAAGAAGATGTGGAGGAAGGCATGCAGAAAGGAGTCAGAGAGCCACTGGTGGTCCGTGCAAGCAAAGGGCATCCATGGATGGTTTACTTTACTACATTCGTTGCAGTGTGTGGTTCTTATGAATTTGGAGCTTGTGCGGGATATTCATCTCCCACTCAAGATGCTATCAGGAAGGATTTTAGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGATCCATCTTGACTTTTGGTGCAATGGTTGGCGCAATAACAAGTGGGCCTATAGCCGATTTTATTGGACGGAAAGGGGCAATGAGAGTGTCAAGTGCTTTCTGTGTCGCAGGGTGGCTAGTTATTTACTTTGCTGAGGGCCCAGTGTATTTGGACATTGGGAGGCTATCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTTGTAGCAGAAATTGCACCAAAAGAACTTCGAGGGACCCTGACTACCTTAAATCAGTTCATGATCACGGCTGCGGTGTCAGTGTCATTCACAATTGGAAACGTGTTTTCATGGAGGGTTTTAGCTATAATTGGCCTCATTCCCACTGCTGTATTGCTTTTGGGTCTGTTTTTCATTCCGGAGTCTCCTAGATGGCTGGCAAAGAGAGGACGTGAAAAAGATTTTGTGGCAGCACTGCAAATACTTCGTGGCAACGATGCTGATATATCTGAGGAGGCAGAGGAAATTCAGGATTATATAACTACTTTGGAGCGGCTCCCAAAATCCAGGCTGCTGGAATTGTTTCATAGAAGATATTTGCGCTCAGTCACTATTGGAATAGGCCTTATGGTCTGCCAGCAGTTTGGGGGAATCAATGGAATTTGCTTTTATACCAGCAGTATTTTTGAACTAGCAGGATTTTCTCCGACCATCGGGACTATTACATATGCCTGCCTTCAGATTGTGATCACAGGTCTTGGAGCAGCCTTAATAGATAAAGCTGGCAGGAAGCCCCTTCTTCTATTATCCGGATCGGGATTGGTCGCAGGATGCACATTTGTAGCAGTTGCATTCTATCTCAAGGTTCACGAGGTTGGTGTTGAGGCAGTCCCAGCACTTGCCGTAACTGGCATACTGGTCTACATAGGATCATTTTCAATAGGAATGGGAGCAATTCCTTGGGTTGTGATATATTTCCTGTCAATATTAAAGGGCTGGCAGGAAGTGTGGCCACATTAG
>Glyma19g33480.1 sequence type=predicted peptide gene model=Glyma19g33480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIKEDVEEGMQKGVREPLVVRASKGHPWMVYFTTFVAVCGSYEFGACAGYSSPTQDAIRKDFSLSLAEYSLFGSILTFGAMVGAITSGPIADFIGRKGAMRVSSAFCVAGWLVIYFAEGPVYLDIGRLSTGYGMGVFSYVVPVFVAEIAPKELRGTLTTLNQFMITAAVSVSFTIGNVFSWRVLAIIGLIPTAVLLLGLFFIPESPRWLAKRGREKDFVAALQILRGNDADISEEAEEIQDYITTLERLPKSRLLELFHRRYLRSVTIGIGLMVCQQFGGINGICFYTSSIFELAGFSPTIGTITYACLQIVITGLGAALIDKAGRKPLLLLSGSGLVAGCTFVAVAFYLKVHEVGVEAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGLAGSVATLVNWFGAWLCSYTFNFFMSWSSYGTFILYAAINALAILFIIVAVPETKGKSLEQLQADINS* >Glyma19g33480.2 sequence type=predicted peptide gene model=Glyma19g33480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIKEDVEEGMQKGVREPLVVRASKGHPWMVYFTTFVAVCGSYEFGACAGYSSPTQDAIRKDFSLSLAEYSLFGSILTFGAMVGAITSGPIADFIGRKGAMRVSSAFCVAGWLVIYFAEGPVYLDIGRLSTGYGMGVFSYVVPVFVAEIAPKELRGTLTTLNQFMITAAVSVSFTIGNVFSWRVLAIIGLIPTAVLLLGLFFIPESPRWLAKRGREKDFVAALQILRGNDADISEEAEEIQDYITTLERLPKSRLLELFHRRYLRSVTIGIGLMVCQQFGGINGICFYTSSIFELAGFSPTIGTITYACLQIVITGLGAALIDKAGRKPLLLLSGSGLVAGCTFVAVAFYLKVHEVGVEAVPALAVTGILVYIGSFSIGMGAIPWVVIYFLSILKGWQEVWPH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
