SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g33451

Feature Type:gene_model
Chromosome:Gm19
Start:41074261
stop:41076980
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g33451
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G48010AT Annotation by Michelle Graham. TAIR10: receptor-like kinase in in flowers 3 | chr2:19641465-19643318 FORWARD LENGTH=617 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004702GO-mf Annotation by Michelle Graham. GO Molecular Function: receptor signaling protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF895Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_B9SFK9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SFK9_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233EFECUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EFEC related cluster n=1 Tax=unknown RepID=UPI000233EFEC SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g33451
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g33451 not represented in the dataset
Glyma19g33451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33451
ParalogEvidenceComments
Glyma03g30530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33451 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g152200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g33451
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g33451
>Glyma19g33451.1   sequence type=CDS   gene model=Glyma19g33451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTTTCCCTTCTATTTCTACATCTTTTCTGTTCTTTTCCTTACCTTGTATCTCCCACCTCCTTCCCTGGCCGCAAACCACACCGTCCCATGCCCCCTCCACGTCGACGTCCTCCGCGAGGTTGGCGGCGGGCGGCGGCCCAAGTTCGACTCCGGCACGCAGTGCCATTACATCCTCCAAGCCCTCCACCTCCTCCAGGCCGACTACCTCCGGCGCAGCAGCCTCTTCGTTCCGCCGTTGAACTCCTCGGAGTCGTGCTGGAAGACCTTCCAATCCTTCATCAACGAGTTCGACCCCAGCATCACCGACATCCGCGCCTCCTGCGGCTTCAGAACCGAGTGGATCTCCCAGGGCTGCATGAACTTCACCACCAAACAAGAATTCGAAGAAATTGTTCCCCCCAACGCAATCCAACCCGTGGTAGCGGACTGCAACCAGCCCCTCGATAACAACGCCCCCTGCGCCCTCTGCATCACCAAACTCTCCAGCATGTTATCCTACTTAACCGGAACAACCGTAGGTAACGTCACCGATTGCAGAGCCTATACTCAAATCTACGCCGCTTCTCTTTCTGATCAATACGGAGCCTCTGATCCTGGAACAGCTAAGTGCCTCTTCGGTCTCGATTTTTCCTCCTCCGGCTCCGGTGGTAAGCGACGAAAAATCCTTATTGCGGTCGTTTCCGTTTTCTGTGTGTTGGCTTTGGCTGTGTTTGCTGGGCTTTGGGCTTACTTGAGATTCAAGAAGAGGAAGGAGGTTGCTGGAACAACTGAGCTGGGTTTGGGTTCTGGGTTGGATTCAATGAACCAGAGCACCACTTTGATTAGGTTCACTTTTGATGACATTAAAAAGGCTACCAGGAACTTCTCCAGGGATAACATAATCGGAAGTGGTGGTTACGGGAATGTTTACAAAGGGATGTTATTGGATGGTAGCCAAGTTGCTTTTAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTCACTCATGAAGTTGAGGTTATTGCGAGTGTGAGGCATGTGAATCTTGTTACCTTGAGAGGTTATTGTACTGCTACCACCAATTTGGAAGGCCACCAGAGGATTATTGTCACTGATTTGATGGAAAACGGGAGTCTTTATGATCATTTATTCGGTTCTGCTAAGAAGAATCTCAGTTGGCCAATTCGTCAAAAGATTGCTCTGGGGACCGCTAGGGGGTTGGCTTATTTGCACTACGGAGCTCAACCTTCCATAATCCATAGGGATATTAAGGCTAGTAACATTCTTCTGGACCACCATTTTGAAGCCAAGGTTGCGGATTTCGGGTTGGCCAAGTTTAACCCCGAGGGAATGACTCATATGAGTACTAGAGTGGCTGGGACTATGGGGTATGTTGCTCCTGAGTATGCCTTGTATGGACAATTGACAGATAGAAGTGATGTGTTCAGCTTTGGGGTTGTGCTTCTTGAGCTCTTGAGTGGGAGAAAGGCCCTTCAGACGGACAATGATGGCCAACCCGCTGCACTCACTGACTTTGCTTGGTCGTTAGTTAGGAATGGTAGTGCTTTGGATGTTGTTGAAGATGGTGTTCCAGAACCTGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTGCTGTGTTCTCATCCACAGCTATATGCTAGGCCTACAATGGATCAGGTTGTTAAAATGCTTGAGACAGATGAATCTGTGCCCTCATTGATGGAAAGGCCAATTCCTTTTATTGCTGGGAGGCTTGATATTGAGAAATCTGCGCTGAGTAACTCGGGTCACCTATGCAGTCCAACTGGTTATCAAGCTTATACATTACAAGCTCGACGAAAATCTAATTCTAAGGAGGAAGAAGAAGAAGAAGAAGGAAGTTCGGTGGCTGAGACTGTTACAACAGATTGA
Predicted protein sequences of Glyma19g33451
>Glyma19g33451.1   sequence type=predicted peptide   gene model=Glyma19g33451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFPFYFYIFSVLFLTLYLPPPSLAANHTVPCPLHVDVLREVGGGRRPKFDSGTQCHYILQALHLLQADYLRRSSLFVPPLNSSESCWKTFQSFINEFDPSITDIRASCGFRTEWISQGCMNFTTKQEFEEIVPPNAIQPVVADCNQPLDNNAPCALCITKLSSMLSYLTGTTVGNVTDCRAYTQIYAASLSDQYGASDPGTAKCLFGLDFSSSGSGGKRRKILIAVVSVFCVLALAVFAGLWAYLRFKKRKEVAGTTELGLGSGLDSMNQSTTLIRFTFDDIKKATRNFSRDNIIGSGGYGNVYKGMLLDGSQVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKNLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHHFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTDRSDVFSFGVVLLELLSGRKALQTDNDGQPAALTDFAWSLVRNGSALDVVEDGVPEPGPPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSLMERPIPFIAGRLDIEKSALSNSGHLCSPTGYQAYTLQARRKSNSKEEEEEEEGSSVAETVTTD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo