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Report for Sequence Feature Glyma19g33370

Feature Type:gene_model
Chromosome:Gm19
Start:40997225
stop:41003342
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g33370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20770AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 59 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7215345-7216648 REVERSE LENGTH=215 SoyBaseE_val: 4.00E-52ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1N9C7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N9C7_SOYBN SoyBaseE_val: 1.00E-149ISS
UniRef100_Q01HF6UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0157K09-H0214G12.1 protein n=2 Tax=Oryza sativa RepID=Q01HF6_ORYSA SoyBaseE_val: 7.00E-40ISS

Expression Patterns of Glyma19g33370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33370
ParalogEvidenceComments
Glyma03g30450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g151500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g33370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g33370
>Glyma19g33370.4   sequence type=CDS   gene model=Glyma19g33370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAAGAGCATCAATGTTCTGGAAAGTGGTGAAGAACCACAGACACAGGAACCAGATGGAGAAGATCAACAAGCTGCAGCATCAATGCCAAGTACCTCGAGCTGAAGAGAAATTTGTATTGCAATTTATGGATTCGATGGATAACTACCTATCCCTCTTTGATGCAGTGTCCTCCACACTTCGACAGGGATGGTTTGACTTAGCAAGTGCTCGACATTCCATGGGTGCTTCTCGCATTAATAGTTCTTTATTGGACCTGAAATTTCATTCAGCTGCTACAACATTGAAGATAACCAACTATGATGGTACACAGCCATGCTTCATGTTGCGTAAATGGGTATCCTCTGAACATGAAAGTTCTCAGTTAGAAGATGAGAATGTGCAGTCACAAGATGGTAGTAGTGTCAAATCTTCTGGACTTGTAGAAAATGCTGAAGTTCAAAATGAGCGATCCAAGTCCTTGTCAATTTTTGGAGTTTTAATTTCCCCAAAGCTTCGAGCCTCCCAGCTGTCATTTGAGAAAGCACTAGAGACACTCATAGAAATAGCCAATATGCAATCGTCATTGTTATATTCTTTTCACCAACTTCGAAGGGTGGAAGATACCAAAGAATAA
Predicted protein sequences of Glyma19g33370
>Glyma19g33370.4   sequence type=predicted peptide   gene model=Glyma19g33370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEERASMFWKVVKNHRHRNQMEKINKLQHQCQVPRAEEKFVLQFMDSMDNYLSLFDAVSSTLRQGWFDLASARHSMGASRINSSLLDLKFHSAATTLKITNYDGTQPCFMLRKWVSSEHESSQLEDENVQSQDGSSVKSSGLVENAEVQNERSKSLSIFGVLISPKLRASQLSFEKALETLIEIANMQSSLLYSFHQLRRVEDTKE*






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