Report for Sequence Feature Glyma19g33300
Feature Type: gene_model
Chromosome: Gm19
Start: 40932421
stop: 40933870
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g33300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G42500 AT
Annotation by Michelle Graham. TAIR10: Disease resistance-responsive (dirigent-like protein) family protein | chr5:16994359-16994916 REVERSE LENGTH=185
SoyBase E_val: 1.00E-62 ISS
GO:0006952 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR21495 Panther
NUCLEOPORIN-RELATED
JGI ISS
PF03018 PFAM
Dirigent-like protein
JGI ISS
UniRef100_I1N9C1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9C1_SOYBN
SoyBase E_val: 7.00E-131 ISS
UniRef100_Q45W75 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance-responsive family protein n=1 Tax=Arachis hypogaea RepID=Q45W75_ARAHY
SoyBase E_val: 1.00E-76 ISS
Expression Patterns of Glyma19g33300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma19g33300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g151000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g33300
Coding sequences of Glyma19g33300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g33300.1 sequence type=CDS gene model=Glyma19g33300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCAACACCAAACACCTCACATTTACTTTCACCATCGTTCTCACGCTCCTCTTCTCATTCGCCACAGCAAAATCCCCAACGGCTTTGGGTGTCCAGAAGGAGAAGCTCAGCCACCTTCACTTCTTCTTCCACGACATAGTGAGCGGTCCAAAGCCCACCGCGGTGAGAGTGGCCCAGGCCCACATGACCAACACCTCCTCCACGCTTTTCGGGCTCCTGATGATGGCCGACGACCCATTGACCGTGGGCCCCGAGCCCGGGTCCAAACTCGTGGGAAAGGCCCAAGGAATTTACGGATTTGCGTCCCAGGAAGATATGGGTTTATTGATGATCATGAATTTCGCGTTCACCGAAGGGAAATACAATGGCAGCACACTAAGCTTGTTGGGGTGGAACGCGGTGTTGTCCACCGTGAGGGAGATGCCAATAGTTGGAGGAAGCGGGGCTTTCCGGTTCGCACGTGGGTATGCTCAGGCCAAGACTCACACGGTTGATTACAAGACAGGGGATGCTGTCGTGGAGTACAACGTCTACGTGCTCCATTATTAA
Predicted protein sequences of Glyma19g33300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g33300.1 sequence type=predicted peptide gene model=Glyma19g33300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANTKHLTFTFTIVLTLLFSFATAKSPTALGVQKEKLSHLHFFFHDIVSGPKPTAVRVAQAHMTNTSSTLFGLLMMADDPLTVGPEPGSKLVGKAQGIYGFASQEDMGLLMIMNFAFTEGKYNGSTLSLLGWNAVLSTVREMPIVGGSGAFRFARGYAQAKTHTVDYKTGDAVVEYNVYVLHY*