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Report for Sequence Feature Glyma19g33290

Feature Type:gene_model
Chromosome:Gm19
Start:40930958
stop:40932027
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g33290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42500AT Annotation by Michelle Graham. TAIR10: Disease resistance-responsive (dirigent-like protein) family protein | chr5:16994359-16994916 REVERSE LENGTH=185 SoyBaseE_val: 4.00E-62ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR21495Panther NUCLEOPORIN-RELATED JGI ISS
PF03018PFAM Dirigent-like protein JGI ISS
UniRef100_B9SYV5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance response protein, putative n=1 Tax=Ricinus communis RepID=B9SYV5_RICCO SoyBaseE_val: 6.00E-81ISS
UniRef100_I1N9C0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9C0_SOYBN SoyBaseE_val: 7.00E-136ISS

Expression Patterns of Glyma19g33290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33290
ParalogEvidenceComments
Glyma03g30360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g150900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g33290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g33290
>Glyma19g33290.1   sequence type=CDS   gene model=Glyma19g33290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAATCCAAAAACCTCACATATATTTTCACCATCGTTCTCACCCTCCTCTTCTCATTCGCCACAGCAAAATCCCATAGTTTCCATCGAAGCATATCTCCAACAGCTTTGGGTCTCCAGAAGGAGAAGCTCAGCCACCTTCACTTCTTCTTCCACGACATAGGGAGCGGTCCAAAGCCCACCGCCGTGAGAGTGGCCCAGGCCCACATGACCAACACTTCCTCCGCATTTTTTGGAATTCTGGTGATGGCCGACGACCCATTGACCGTGGGCCCAGAACCCGGATCCAAACTCGTCGGAAAGGCCCAAGGAATTTACGGATTTGCGTCCCAGGAAGATGTGGGTTTATTGATGATCATGAGTTTCGCGTTCACCGAAGGGAAATACAATGGCAGCACACTAAGCTTGTTGGGGCGGAACGCGGTGTTCTCCACCGTGAGGGAGATGCCAATAGTTGGAGGAAGCGGGGCTTTCCGGTTCGCACGTGGGTATGCTCAGGCCAAGACTCACACGTTTGATTACAAGACAGGGGATGCTGTCGTGGAGTACAACGTCTACGTGTTCCATTATTAA
Predicted protein sequences of Glyma19g33290
>Glyma19g33290.1   sequence type=predicted peptide   gene model=Glyma19g33290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKSKNLTYIFTIVLTLLFSFATAKSHSFHRSISPTALGLQKEKLSHLHFFFHDIGSGPKPTAVRVAQAHMTNTSSAFFGILVMADDPLTVGPEPGSKLVGKAQGIYGFASQEDVGLLMIMSFAFTEGKYNGSTLSLLGRNAVFSTVREMPIVGGSGAFRFARGYAQAKTHTFDYKTGDAVVEYNVYVFHY*






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