Glyma19g33260 - SoyBase

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Report for Sequence Feature Glyma19g33260

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40914931
stop:	40916095
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58070	AT	Annotation by Michelle Graham. TAIR10: C2H2 and C2HC zinc fingers superfamily protein \| chr3:21506845-21507606 REVERSE LENGTH=253	SoyBase	E_val: 4.00E-42	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0010026	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome differentiation	SoyBase	N/A	ISS
GO:0010091	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome branching	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11389	Panther	ZINC FINGER PROTEIN	JGI		ISS
PTHR11389:SF374	Panther	KRAB-RELATED	JGI		ISS
UniRef100_B9SYV7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SYV7_RICCO	SoyBase	E_val: 7.00E-79	ISS
UniRef100_UPI000233EFE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFE5 related cluster n=1 Tax=unknown RepID=UPI000233EFE5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33260

Paralog	Evidence	Comments
Glyma03g30340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g150800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33260

Limit To All Plant Sequences

>Glyma19g33260.1   sequence type=CDS   gene model=Glyma19g33260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACACTACTGAGAGAGAGACCCACGACTTCATGAACGTCCATTCTTTCTCTCAGCTCCCCTTCCTCCGCCCCGCACCACCCTCCAAAGACAAAGCCATTCGCCTCTTCGGCCATGAATTTATCGACGCGCCCACCTCCAACACGTTTATGATCTCCAACAACAACGTTAGCCCTTCCCAACATAATAATACCAACAAAGACGTCAACAACAACAACGTAGAAAACAACGGCGCCGAGAGCAGCCGCAGATTCGAGTGCCATTATTGTTGCAGAAACTTCCCCACTTCCCAAGCCTTAGGCGGCCACCAAAACGCGCACAAACGAGAGCGCCAGCACGCGAAACGACACCTTCAAAGTACCCTGATCTCCGATGCAAACGCGTATAGCTTCATGAACTACAGGTTCGGTTCAACGGCGATGTCTAATTACTCTTACTCTTCTTCTTATCCAACGTGGAATAGTTCCAACTCTTCAAGCGCTATGATTGGAAGGTTCTACGGAAACTCCTATTCTCATCAGCAACTTCAACCTATAAATGGAAGCCCTTTGGGTTCGTGGCGAATCCCCACCGCCGCCACAACTGCTCATGCGCAAAGTAACCCTATTTTCAACCGTGAATGCTCGTTGCATCCTTTGCCTTTGTTTTCAGGTGAGGAAATGGTGAACGCGAGGATGGGGTTCTCCGGTTCGCAGAACCGGTTTGGTAATTATGACCCCAAGTCCAGCGTAAACGACCATCTGAGTTTGGATCTTCATCTGTAA

Predicted protein sequences of Glyma19g33260

Limit To All Plant Sequences

>Glyma19g33260.1   sequence type=predicted peptide   gene model=Glyma19g33260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNTTERETHDFMNVHSFSQLPFLRPAPPSKDKAIRLFGHEFIDAPTSNTFMISNNNVSPSQHNNTNKDVNNNNVENNGAESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRHLQSTLISDANAYSFMNYRFGSTAMSNYSYSSSYPTWNSSNSSSAMIGRFYGNSYSHQQLQPINGSPLGSWRIPTAATTAHAQSNPIFNRECSLHPLPLFSGEEMVNARMGFSGSQNRFGNYDPKSSVNDHLSLDLHL*

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