Glyma19g33210 - SoyBase

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Report for Sequence Feature Glyma19g33210

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40823339
stop:	40832377
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58060	AT	Annotation by Michelle Graham. TAIR10: Cation efflux family protein \| chr3:21497778-21499676 REVERSE LENGTH=411	SoyBase	E_val: 3.00E-167	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008324	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015562	GO-mf	Annotation by Michelle Graham. GO Molecular Function: efflux transmembrane transporter activity	SoyBase	N/A	ISS
KOG1485	KOG	Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily)	JGI		ISS
PTHR11562	Panther	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	JGI		ISS
PTHR11562:SF10	Panther	ZINC TRANSPORTER SLC30A1-RELATED	JGI		ISS
PF01545	PFAM	Cation efflux family	JGI		ISS
UniRef100_B9T072	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cation efflux protein/ zinc transporter, putative n=1 Tax=Ricinus communis RepID=B9T072_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EFE4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFE4 related cluster n=1 Tax=unknown RepID=UPI000233EFE4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33210

Paralog	Evidence	Comments
Glyma03g30290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g150000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33210

Limit To All Plant Sequences

>Glyma19g33210.2   sequence type=CDS   gene model=Glyma19g33210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGGTTTGGATCATTTAAAGGCACCGTTTTTGTCAAGCAATAATAATGGTGAGCTCAGTGAAGTCACTCGTCTCAAATGCGATTTTTTCTCCAAATTGCCTGATAAGGTTCGGTGTGGTCTCGATCCTGAGCTCTCTTTTCACATTGACTACTCAAAGGCAACTGGCTTAACAAAAGGGGAGAAAGAGTATTACGAAAGGCAGTTTGCCACCCTAAGGTCTTTTGAGGAGGTTGATTCAACTGAATCTTCAAATGTCATTGAGGATGGGTCAGTGGATGCGGAACAAGTGCAGTCTGAAAGGGCAATGAAAATATCCAATTGGGCAAACGTTTTTTTACTCGCTTTTAAGAATCACACCTTACTGGTATTTGCAACAGTTAAGAGTGGTTCCATAGCTATTGCTGCATCAACACTGGATTCTCTGCTAGATCTTATGGCTGGTGAGTATCCCATTGGAAAATTGAGAATGCAACCGGTCGGCATTACCATCTTTGCCGCTATCATGGCTACATTGGGTTTTCAAGTGCTGGTTGAGGCCGTTCAACAATTGATTAAAGGAAAACCAACCTTGAAGATGACTTCAGATCAATTGTTTTGGTTGTATATAATCATGCTGATTGCCACTGGCGTAAAGCTTTTGCCCTGGTTGTATTGTAGAAGTTCAGGAAATAAAATAGCCGATCACTATTTTGATGTCATAACCAACATAGTTGGTTTGGTTGCTGCTGTCCTTGGTGATAAATTTAGTTGGTGGATTGACCCTATTGGCGCTATTTTGCTTGCACTCTATACAATTTCAAATTGGTCTAAAACTGTGCTTGAAAATGTTGTTTCCTTGGTTGGACAATCAGCTCCACCTGAAGTATTGCAGAAATTGACGTACCTTGTTTTAAGATACCATCCTCAAATCACACGTATTGACACAGTCCGTGCCTACACTTGTGGAGTTTTATACTTTGTTGAGGTGGACATAGAACTACCGGAGGATCTTCCACTGAAAGAAGCACATGCAATTGGAGAATCTTTGCAGATAAGGATCGAAGAACTCCCTGAAGTTGAGAGAGCCTTTGTTCATCTTGACACTGAATGCGAGCATAAGCCAGAGCACTCTGTTCTTAGCACTCTTCCCAGCAGCCAGATATAA

Predicted protein sequences of Glyma19g33210

Limit To All Plant Sequences

>Glyma19g33210.2   sequence type=predicted peptide   gene model=Glyma19g33210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGGLDHLKAPFLSSNNNGELSEVTRLKCDFFSKLPDKVRCGLDPELSFHIDYSKATGLTKGEKEYYERQFATLRSFEEVDSTESSNVIEDGSVDAEQVQSERAMKISNWANVFLLAFKNHTLLVFATVKSGSIAIAASTLDSLLDLMAGEYPIGKLRMQPVGITIFAAIMATLGFQVLVEAVQQLIKGKPTLKMTSDQLFWLYIIMLIATGVKLLPWLYCRSSGNKIADHYFDVITNIVGLVAAVLGDKFSWWIDPIGAILLALYTISNWSKTVLENVVSLVGQSAPPEVLQKLTYLVLRYHPQITRIDTVRAYTCGVLYFVEVDIELPEDLPLKEAHAIGESLQIRIEELPEVERAFVHLDTECEHKPEHSVLSTLPSSQI*

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