Report for Sequence Feature Glyma19g33200
Feature Type: gene_model
Chromosome: Gm19
Start: 40817592
stop: 40820751
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g33200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G41950 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 24 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17513137-17514029 FORWARD LENGTH=266
SoyBase E_val: 5.00E-81 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1N9B3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9B3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g33200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g33200
Paralog Evidence Comments
Glyma03g30280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g33200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g149900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g33200
Coding sequences of Glyma19g33200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g33200.1 sequence type=CDS gene model=Glyma19g33200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATTCAATTTCTTTAGGTACCTTCGTCTTCACTCCCCCTCCAGCATGCAAGTTCCGCCCCCTTCTTCAAACCAAACACCAACCCATCTTCCACAGCCTCTGCAGCAGTGGTCTCACTCTCTCCCGAATTTCTCTGACCCAAAAACCCACTTTTCTACGAGCCACGGACTCAAACACCGACGCCCCCATTTCCCTCCCCGAGGGCGCGTCCTTCGTTTCCATCCCAGAAATCATCGAGAAGGACTGGTCCGTGCTCGATTGCGCCGAACACCGAAACATTGACCGCATTATAGCTTCCGGCAACGTCGGACAGAATTCGAGGGTTTTGGTCTCAACTGGGTCCGAAGACTTTGTTGATACCTTAGTGGGTTTAACTCCCTCTGTGTTTGTTGTTCATGACTCGCTTCTCACGCTGGCTTGTATCAAAGAAAAATATGACAGGGTCAAGTGTTGGCAAGGGGAGATTATTTATGTTCCGGAAAAGTGGGCTCCTTTTGATGCTGTGTTTCTTTATTTTCTACCTGCGTTGGCCTTCAAACTTGACCAAATTTTGGGCTCTTTGGCTGGGAAATGTGCAACGGGTGGAAGGGTGATTATCAGTCATCCCAAAGGGAGAGAAGTATTAGAACAGCAACGAAAACAGTACCCAGATGTTGTAGTTTCTGACCTACCTGATAAAACATATTTACAAAGTGTTGCAGCTGCCCATTCTTTTGATGTGGCTGAATTTGTGGATGAACCTGGCCTTTATTTAGCCATTTTGATCTGCTCAAGGGCTTAA
Predicted protein sequences of Glyma19g33200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g33200.1 sequence type=predicted peptide gene model=Glyma19g33200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNSISLGTFVFTPPPACKFRPLLQTKHQPIFHSLCSSGLTLSRISLTQKPTFLRATDSNTDAPISLPEGASFVSIPEIIEKDWSVLDCAEHRNIDRIIASGNVGQNSRVLVSTGSEDFVDTLVGLTPSVFVVHDSLLTLACIKEKYDRVKCWQGEIIYVPEKWAPFDAVFLYFLPALAFKLDQILGSLAGKCATGGRVIISHPKGREVLEQQRKQYPDVVVSDLPDKTYLQSVAAAHSFDVAEFVDEPGLYLAILICSRA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
