Glyma19g33180 - SoyBase

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Report for Sequence Feature Glyma19g33180

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40796034
stop:	40799948
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41970	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr2:17520517-17522304 REVERSE LENGTH=365	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF816	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9T805	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase PBS1, putative n=1 Tax=Ricinus communis RepID=B9T805_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N9B1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9B1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33180

Paralog	Evidence	Comments
Glyma03g30260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g149700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33180

Limit To All Plant Sequences

>Glyma19g33180.1   sequence type=CDS   gene model=Glyma19g33180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGGGCCCCCGGCAAACCAATACCCAACTGCACCACCTAGAGGGGGTAGCACATACGGAGGAGGTAATGATAGAGGAGAGCCTAGGGGAAATGTTGCGAAGAGTGGTGCCCCGCAGAAAGTATTGCCGATTGAGATACCCTCTATGCCATTGGATGAATTAAACAGGTTAACAGGAAACTTTGGTACAAAGGCTTTTATTGGCGAAGGTTCTTATGGACGAGTTTACTATGCAAAATTGAGTGATGGTACTGATGCTGCAATTAAGAAGCTGGATACCAGTTCTTCCGCAGAACCTGACTCAGATTTTGCGGCTCAGTTATCGATTGTTTCAAGACTGAAGCATGACAATTTTGTGGAGTTGATTGGATATTGTCTAGAGGCAGATAACAGACTTTTGGTTTATCAATATGCAAGTCTTGGTTCTTTGCATGATGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCTGGTCCAGTATTAAGTTGGAGCCAGAGAGCAAAAATTGCATTTGGTGCAGCTAAAGGTCTAGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCTAGCAATGTCTTACTGTTCAACGACTATGAGGCCAAGATAGCTGATTTCAGCTTAACAAATCAGTCTTCTGACACAGCCGCCAGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCCCCAGAGTATGCCATGACAGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGACAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTTAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTATCCTCCAAAGGCTATTGCTAAGTTGGGTGCTGTGGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCAGACCAAACATGACCATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATGCAAAACCAGCTGGTCCCGACTCTCATGCTTGA

Predicted protein sequences of Glyma19g33180

Limit To All Plant Sequences

>Glyma19g33180.1   sequence type=predicted peptide   gene model=Glyma19g33180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCCGGAEEESSGPPANQYPTAPPRGGSTYGGGNDRGEPRGNVAKSGAPQKVLPIEIPSMPLDELNRLTGNFGTKAFIGEGSYGRVYYAKLSDGTDAAIKKLDTSSSAEPDSDFAAQLSIVSRLKHDNFVELIGYCLEADNRLLVYQYASLGSLHDVLHGRKGVQGAEPGPVLSWSQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLGAVAALCVQYEADFRPNMTIVVKALQPLLNAKPAGPDSHA*

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