SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06680 | AT | Annotation by Michelle Graham. TAIR10: spindle pole body component 98 | chr5:2056741-2059369 FORWARD LENGTH=838 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0000930 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: gamma-tubulin complex | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0009898 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: internal side of plasma membrane | SoyBase | N/A | ISS |
| GO:0015631 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tubulin binding | SoyBase | N/A | ISS |
| KOG2000 | KOG | Gamma-tubulin complex, DGRIP91/SPC98 component | JGI | ISS | |
| PTHR19302 | Panther | GAMMA TUBULIN COMPLEX PROTEIN | JGI | ISS | |
| PTHR19302:SF14 | Panther | GAMMA-TUBULIN COMPLEX COMPONENT 3 (GCP-3) | JGI | ISS | |
| PF04130 | PFAM | Spc97 / Spc98 family | JGI | ISS | |
| UniRef100_G7KWA0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gamma-tubulin complex component n=1 Tax=Medicago truncatula RepID=G7KWA0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EFE1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EFE1 related cluster n=1 Tax=unknown RepID=UPI000233EFE1 | SoyBase | E_val: 0 | ISS |
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Glyma19g33160 not represented in the dataset |
Glyma19g33160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g30240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g149500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g33160.2 sequence type=CDS gene model=Glyma19g33160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGAAGAAGACCAGCAGAAGCTTCCAGATCTGGTGAAGGCACTCGTCCACCACCTACTCTCCCTAAATCTCCCCCCAAATTCCCCTCCCCTCAACCCTAACTCCCCCGAATTCCGCAACTCCCTCCGCTACGCCCTCCGCATCCTCTCCAGCCGCCTCACCCCCTCCGTTGCCCCCGACGCCGCCGCCATCGCCGACTCCATCAAGCGCCGCCTCGCCTCCCATGGCCACTCCTCCCAAGCCCTCTCCTTCGCCGACCTCTTCTCCAAATTCGCCTCCAAAGCCCAAAGTGTCGACAAAAAATGGGCCCTCATCTACCTCCTCAAAATCATCTCCGAAGATCGCCACAACAACACCACCGCCACCACTCTCCTCCCCAACCTCAATTTCTCCGAACCAGCAACCTCCAACAAACCCTCCAACAACGGCGGCGTCCTATTAGTCTCCAAGGACCCCGAGAATCGCCGCGACATCGCGTTTCTCGAGTTCGTCAAATTAGTCCGGGAAGAAAACGAGGTGTCGGAAGAGGTTCTCGTCCAAGACGTGCTCTATGCTTGCCAAGGAGTGGATGGTAAGTTTGTGAAACTTGACAGCGAGAGTAAGCGTTATGTGATACCCGTTTCAATTACGGTTCCCAGAGCCCCTAGGAGTATGGTTTACAACCTCTGTGAGTTGGGGGTTTTGTTTAGGAAGGTTAGCGGTTACATTTCGCGGAGTATGGATCGGTTCCCCAATGAAGATGTGGGAACTGTGGGCCAGGCTTTTTGCTCCGCTTTGCAGGATGAGCTTAGTGAGTATTATAAGTTGCTGGCGGTTCTTGAGGCGCAGGCTTCAAACCCTATTCCTTTGGTTTCGGAATCTGCGAGCTCCAGGAACTATCTATCGCTGAGGAGGCTGGCGGTTTGGCTGGCTGAGCCCTTGGTGAAGATGAGGCTGATGGCTGATTTGGTTGAGAAGTGTAGGGTTTTGCGCGGTGGGGCAATGGTGGGGGCGATTCATTTGCATGCGCAGCATGGTGATCCGTTGGTCCATGAATTCATGAGGCGGTTGCTGCAGAGGGTGTGTTCTTCGCTGTTTGAGATGGTGAGGAGGTGGGTTTTGGAAGGGGAGTTGGAGGATATCTTTGCTGAGTTTTTCATTGTTGGGCGGCCTGTGAAGGCTGAGTCCCTCTGGAGAGAAGGGTATAGGCTCCATGATGCCATGCTTCCTTTGTTCATTTCGCCTTCTCTTGCGCAGAGGATATTGAGGACCGGCAAGTCGATTAATTTTCTTCGCGTTTGTTGTGAAGATCGTGGTTGGGCTGATGCTGCGACTGAGGTTGTTGCTGATCACGGAACAATGGCGAGAAGAGGTGGTTTTGGATATGGGGAAACGGATACCCTTGAGTTTTTGGTGGATGAAGCTTCAAAGAGGATTGATAAGCATTTGTTGGATGTGATTTTCAAGAGGTACAAGTTCAAAGAACATTGTCTTGCAATTAAGCAGTATTTGTTGCTTGGGCAAGGTGATTTTGTGCAGTATCTGATGGATATTGTTGGGCCTGAGCTTTCTGAGCCGGCTAACACTATAAGCTCTTTTAAACTTTCAGGACTGCTGGAAACTGCAATTCGGGCTTCTAATGCTCAGTATGATGATCCTGACATTTTGGATAGGCTCAGGGTTAAAATGATGCCACATGAAAGTGGTGATAGGGGCTGGGATGTATTTTCATTAGAATATGATGCTAGAGTTCCACTGGATACGGTGTTCACGGAATCTGTGATGACAAGGTATTTAAGAATTTTTAATTTTCTGTGGAAGCTTAGACGAGTGGAACATGCGCTTACTGGAGCCTGGAAGACCATGAAACCAAACTGCATTACCTCTAATTCCTTCACCAGATTGCAACATGCAGTAAAGATGCAGTTAGTTTCGACATTGAGGCGCTGTCAGGTTCTTTGGGTTGAAATCAATCACTTCATTTCAAACTTGCAATATTATATAATGTTTGAAGTGTTGGAGGTATCATGGTCAAATTTTTTGGCTGAGATGGAACTAGCCAAGGACCTTGATGATCTACTTGCTGCTCATGAAAAATATCTGCATTCTATTGTAGAGAAATCTCTCCTTGGAGAGCTTTCCCAGTCTCTTTACAAGTCACTATTTGTAATTTTTGATCTTATATTACGTTTTCGGAGCTGTGCAGATCGGCTGTATGAAGGTATTCATGAGTTGCAAGCTAGAATCACAGAATCTTCCATATCCTCTCGAGACCAGAATAAATCACGATCTCAAAAGCAACTAAGTGAAAAATCTGCAGAACAAGGATCCTGGATTGCTGATGGGAGGAAAGCCCTGACTCAACGAGCTGGTGAATTTCTACGAAATATGGAGCAAGATCTGGATGCAATTGCTAAGGAGTATTCGTCATTGCAAGAGGGATTCATTTCTCAGTTGCCTGTACAGCAGCATGTTGATCTAAAGTTTCTCTTTTTCCGTCTTGACTTCAACGAATTTTATAGGCGGTTGTGTCCTAGCATGTAG
>Glyma19g33160.2 sequence type=predicted peptide gene model=Glyma19g33160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEEEDQQKLPDLVKALVHHLLSLNLPPNSPPLNPNSPEFRNSLRYALRILSSRLTPSVAPDAAAIADSIKRRLASHGHSSQALSFADLFSKFASKAQSVDKKWALIYLLKIISEDRHNNTTATTLLPNLNFSEPATSNKPSNNGGVLLVSKDPENRRDIAFLEFVKLVREENEVSEEVLVQDVLYACQGVDGKFVKLDSESKRYVIPVSITVPRAPRSMVYNLCELGVLFRKVSGYISRSMDRFPNEDVGTVGQAFCSALQDELSEYYKLLAVLEAQASNPIPLVSESASSRNYLSLRRLAVWLAEPLVKMRLMADLVEKCRVLRGGAMVGAIHLHAQHGDPLVHEFMRRLLQRVCSSLFEMVRRWVLEGELEDIFAEFFIVGRPVKAESLWREGYRLHDAMLPLFISPSLAQRILRTGKSINFLRVCCEDRGWADAATEVVADHGTMARRGGFGYGETDTLEFLVDEASKRIDKHLLDVIFKRYKFKEHCLAIKQYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLSGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMTRYLRIFNFLWKLRRVEHALTGAWKTMKPNCITSNSFTRLQHAVKMQLVSTLRRCQVLWVEINHFISNLQYYIMFEVLEVSWSNFLAEMELAKDLDDLLAAHEKYLHSIVEKSLLGELSQSLYKSLFVIFDLILRFRSCADRLYEGIHELQARITESSISSRDQNKSRSQKQLSEKSAEQGSWIADGRKALTQRAGEFLRNMEQDLDAIAKEYSSLQEGFISQLPVQQHVDLKFLFFRLDFNEFYRRLCPSM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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