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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12040 | AT | Annotation by Michelle Graham. TAIR10: DNA-3-methyladenine glycosylase (MAG) | chr3:3835349-3836781 REVERSE LENGTH=254 | SoyBase | E_val: 4.00E-125 | ISS |
| GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003905 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alkylbase DNA N-glycosylase activity | SoyBase | N/A | ISS |
| KOG4486 | KOG | 3-methyladenine DNA glycosylase | JGI | ISS | |
| PTHR10429 | Panther | DNA-3-METHYLADENINE GLYCOSYLASE | JGI | ISS | |
| PF02245 | PFAM | Methylpurine-DNA glycosylase (MPG) | JGI | ISS | |
| UniRef100_G7KW98 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-3-methyladenine glycosylase n=1 Tax=Medicago truncatula RepID=G7KW98_MEDTR | SoyBase | E_val: 9.00E-131 | ISS |
| UniRef100_I1N9A6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9A6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g33150 not represented in the dataset |
Glyma19g33150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g149400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g33150.2 sequence type=transcript gene model=Glyma19g33150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTGGTGGTTGGTCAAGTTTTTTGGCAAAGAAGGAAGGGATTCAAAAGTGAAACCATGCGGCATGTCTCCATCCCCACCAAAACGGCATTGGAGCGCGACCCAACTCCTGAATCCTCCGACTCTGACGTATTTGCCTCCTTCCGTTTCCGCGGCACCGCAATGAAGTGCAACCAGCGCTTCAAGCGGGTCGCCAAACCCAGATTACCGGTTCAGACAACCGAACCAGTTCGTCGTTCCCTCAGAACCAAACCCAATCCCTCACCGCAACCGGACATATCTCCCGGCAAAATGAAAACCTTGACCCTCGATTTCTTCCAAATCGACGCGCTGGACCTCGCCCCTCGCTTGCTCGGAAAGTTTCTTCGCCGAGACGACGTCGTTCTTCGGATCACCGAGGTTGAAGCGTATAGACCAAACGACTCCGCTTGTCACGGTCGCTTTGGCGTTACTTCAAGAACTGCCCCTGTTTTTGGGCCAGGTGGGCATGCGTATGTTTACCTTTGCTATGGTCTCCACATGATGCTGAATGTTGTTGCTGACAAGGAAGGAGCTGGAGCTGCTGTTTTGATACGCTCTTGTTCTCCCGTTAGTGGATTGGATGTCATTCAACAGCGCCGAGGTCTAAAAACTGAGAAACCTATACTTCTTACTGGTCCTGGGAAGGCACTGGGTCTTTCGACAGAATGGTCCAACCATCCACTCTATACACCTGGTGGTTTGGAACTCTTAGATGGTCCAGAGCCAGAAAACATATTGGTAGGTCCACGTGTTGGTATCCAATACGCTTCGCCAGAGCATATCAACGCATTGTGGAGATTTGCCATTGCAGGTACCCCTTGGATCAGTGCTCCAAAAAACACTCTCAGGCCGGCCTAGTAGTGTACTTGTAGGAAACTTAAGGGAGAAAAATGGTTTGGTGATGATTAACAGATCCAATTTATATTCACCTTAGAGAAAAGATTAGAAATGTGTCCCGTATCTGTATCACCTTTTTAATTTACGAGCATATGCGTGTACAGCTGTTTTATTACTGCATCAATGCTGCTATTTTCTTAGTAATGACCAGTACCATAAGAAAAATCATCTTTAAGGTATGGTAAAAATTATAAAACTAACATAAATTGATTTTAGTTATATTATATAAGAGTTTTAT
>Glyma19g33150.1 sequence type=CDS gene model=Glyma19g33150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGCATGTCTCCATCCCCACCAAAACGGCATTGGAGCGCGACCCAACTCCTGAATCCTCCGACTCTGACGTATTTGCCTCCTTCCGTTTCCGCGGCACCGCAATGAAGTGCAACCAGCGCTTCAAGCGGGTCGCCAAACCCAGATTACCGGTTCAGACAACCGAACCAGTTCGTCGTTCCCTCAGAACCAAACCCAATCCCTCACCGCAACCGGACATATCTCCCGGCAAAATGAAAACCTTGACCCTCGATTTCTTCCAAATCGACGCGCTGGACCTCGCCCCTCGCTTGCTCGGAAAGTTTCTTCGCCGAGACGACGTCGTTCTTCGGATCACCGAGGTTGAAGCGTATAGACCAAACGACTCCGCTTGTCACGGTCGCTTTGGCGTTACTTCAAGAACTGCCCCTGTTTTTGGGCCAGGTGGGCATGCGTATGTTTACCTTTGCTATGGTCTCCACATGATGCTGAATGTTGTTGCTGACAAGGAAGGAGCTGGAGCTGCTGTTTTGATACGCTCTTGTTCTCCCGTTAGTGGATTGGATGTCATTCAACAGCGCCGAGGTCTAAAAACTGAGAAACCTATACTTCTTACTGGTCCTGGGAAGGTTGGTCAGGCACTGGGTCTTTCGACAGAATGGTCCAACCATCCACTCTATACACCTGGTGGTTTGGAACTCTTAGATGGTCCAGAGCCAGAAAACATATTGGTAGGTCCACGTGTTGGTATCCAATACGCTTCGCCAGAGCATATCAACGCATTGTGGAGATTTGCCATTGCAGGTACCCCTTGGATCAGTGCTCCAAAAAACACTCTCAGGCCGGCCTAG >Glyma19g33150.2 sequence type=CDS gene model=Glyma19g33150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGCATGTCTCCATCCCCACCAAAACGGCATTGGAGCGCGACCCAACTCCTGAATCCTCCGACTCTGACGTATTTGCCTCCTTCCGTTTCCGCGGCACCGCAATGAAGTGCAACCAGCGCTTCAAGCGGGTCGCCAAACCCAGATTACCGGTTCAGACAACCGAACCAGTTCGTCGTTCCCTCAGAACCAAACCCAATCCCTCACCGCAACCGGACATATCTCCCGGCAAAATGAAAACCTTGACCCTCGATTTCTTCCAAATCGACGCGCTGGACCTCGCCCCTCGCTTGCTCGGAAAGTTTCTTCGCCGAGACGACGTCGTTCTTCGGATCACCGAGGTTGAAGCGTATAGACCAAACGACTCCGCTTGTCACGGTCGCTTTGGCGTTACTTCAAGAACTGCCCCTGTTTTTGGGCCAGGTGGGCATGCGTATGTTTACCTTTGCTATGGTCTCCACATGATGCTGAATGTTGTTGCTGACAAGGAAGGAGCTGGAGCTGCTGTTTTGATACGCTCTTGTTCTCCCGTTAGTGGATTGGATGTCATTCAACAGCGCCGAGGTCTAAAAACTGAGAAACCTATACTTCTTACTGGTCCTGGGAAGGCACTGGGTCTTTCGACAGAATGGTCCAACCATCCACTCTATACACCTGGTGGTTTGGAACTCTTAGATGGTCCAGAGCCAGAAAACATATTGGTAGGTCCACGTGTTGGTATCCAATACGCTTCGCCAGAGCATATCAACGCATTGTGGAGATTTGCCATTGCAGGTACCCCTTGGATCAGTGCTCCAAAAAACACTCTCAGGCCGGCCTAG
>Glyma19g33150.1 sequence type=predicted peptide gene model=Glyma19g33150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRHVSIPTKTALERDPTPESSDSDVFASFRFRGTAMKCNQRFKRVAKPRLPVQTTEPVRRSLRTKPNPSPQPDISPGKMKTLTLDFFQIDALDLAPRLLGKFLRRDDVVLRITEVEAYRPNDSACHGRFGVTSRTAPVFGPGGHAYVYLCYGLHMMLNVVADKEGAGAAVLIRSCSPVSGLDVIQQRRGLKTEKPILLTGPGKVGQALGLSTEWSNHPLYTPGGLELLDGPEPENILVGPRVGIQYASPEHINALWRFAIAGTPWISAPKNTLRPA* >Glyma19g33150.2 sequence type=predicted peptide gene model=Glyma19g33150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRHVSIPTKTALERDPTPESSDSDVFASFRFRGTAMKCNQRFKRVAKPRLPVQTTEPVRRSLRTKPNPSPQPDISPGKMKTLTLDFFQIDALDLAPRLLGKFLRRDDVVLRITEVEAYRPNDSACHGRFGVTSRTAPVFGPGGHAYVYLCYGLHMMLNVVADKEGAGAAVLIRSCSPVSGLDVIQQRRGLKTEKPILLTGPGKALGLSTEWSNHPLYTPGGLELLDGPEPENILVGPRVGIQYASPEHINALWRFAIAGTPWISAPKNTLRPA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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