SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12050 | AT | Annotation by Michelle Graham. TAIR10: Aha1 domain-containing protein | chr3:3839289-3841303 FORWARD LENGTH=360 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0001671 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activator activity | SoyBase | N/A | ISS |
| GO:0051087 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chaperone binding | SoyBase | N/A | ISS |
| KOG2936 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13009 | Panther | HEAT SHOCK PROTEIN 90 (HSP90) CO-CHAPERONE AHA-1 | JGI | ISS | |
| PF08327 | PFAM | Activator of Hsp90 ATPase homolog 1-like protein | JGI | ISS | |
| PF09229 | PFAM | Activator of Hsp90 ATPase, N-terminal | JGI | ISS | |
| UniRef100_G7KW94 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Activator of 90 kDa heat shock protein ATPase-like protein n=1 Tax=Medicago truncatula RepID=G7KW94_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N9A4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N9A4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g33140 not represented in the dataset |
Glyma19g33140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g30231 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g149300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g33140.2 sequence type=transcript gene model=Glyma19g33140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTAAACCTTGACTCAAGAATCCAAGACAGGCTTTTGGGGCTTTCTTTCATTCTAGACCATTCCACACATATAATAATCATCAAAACCCTTAAACTCGGAAAAAAGAGGGCATTGGCATTGCAAATGGCTCGTTACGGCGAGGGCGACAAGCGGTGGATCGTGGAGGACCGCCCCGACGGCACCAACGTCCACAACTGGCACTGGTCCGAGACCAACTGCCTCGACTGGTCCAAAACCTTCTTCAGCAACCTCCTCTCCAACCTCCCTATCCTCCACGGCGAGGCTAACCTCTTCCTCAAAACGACGTCGCTCCGCTCCCTCGACGGCGAGGCCTACGTCAACGTCCGCAAGGGGAAAATCATCCCCGGCTACGAGATCAGCCTCACACTCAATTGGCAGGGCGAAGCCAAAGATTCCCAGGGAACCTCGCTTCTTAAAGTCGACGGCACCGTCGAGATTCCCTACATCTCCGACGAGAACGCCGACGAGGATCCCGAGGTTAGGGTTACCGTTAACGATGAGGGACCGGTTGGGATGAGGATTAAGGACGCCATGCTTTCCAAGGGGAAGCCCTTGATCTTGGAGAAGGTTAGGGTTTGGGTCCAGAGCATGGCCAAAGGTGGTCCTGTTAAGGATGAATTGGAACCCAAGAAGGTTGCGCCGTCGTTGTCGCCGTCTCCGCCGACAACGACAACAACAACAACAACGACAACGACTGCTACGAAGAAGGAGGAGAAGAAAGAGAAGGAGAAGGAGAAGGAGAAGAAGGGGAGGAAGAGTATTGGCATGACGGAGAGGTTCAATTGCAGGGCCAAGGATTTGTATGAAATTTTGATGGATGAGAATAGGTGGAAGGGTTTTACACAGAGCAATGCGAGAATTAGTAAGGAGGTTGGCGGTGAGTTTAGCATTTTTGATGGGTCGGTGACCGGAACTAATTTGGAGTTGCAGGAGGCTAAGTTAATTGTTCAGAGATGGAGGTTTGGGAGCTGGAATGATGGAGTTCAATCCACAGTGAGGCTTGTGTTTGAGGAGCCTGAAGCCGGTGTTACGGTTGTTAAGCTGACACATACTGATGTGCCTGAAGAGGATAGGTGAGTGGTTGATTGGTATTGGTTTTGTGGAAGTTTTGTTTTTGTTTTTGTTTGGTT
>Glyma19g33140.1 sequence type=CDS gene model=Glyma19g33140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCGTTACGGCGAGGGCGACAAGCGGTGGATCGTGGAGGACCGCCCCGACGGCACCAACGTCCACAACTGGCACTGGTCCGAGACCAACTGCCTCGACTGGTCCAAAACCTTCTTCAGCAACCTCCTCTCCAACCTCCCTATCCTCCACGGCGAGGCTAACCTCTTCCTCAAAACGACGTCGCTCCGCTCCCTCGACGGCGAGGCCTACGTCAACGTCCGCAAGGGGAAAATCATCCCCGGCTACGAGATCAGCCTCACACTCAATTGGCAGGGCGAAGCCAAAGATTCCCAGGGAACCTCGCTTCTTAAAGTCGACGGCACCGTCGAGATTCCCTACATCTCCGACGAGAACGCCGACGAGGATCCCGAGGTTAGGGTTACCGTTAACGATGAGGGACCGGTTGGGATGAGGATTAAGGACGCCATGCTTTCCAAGGGGAAGCCCTTGATCTTGGAGAAGGTTAGGGTTTGGGTCCAGAGCATGGCCAAAGGTGGTCCTGTTAAGGATGAATTGGAACCCAAGAAGGTTGCGCCGTCGTTGTCGCCGTCTCCGCCGACAACGACAACAACAACAACAACGACAACGACTGCTACGAAGAAGGAGGAGAAGAAAGAGAAGGAGAAGGAGAAGGAGAAGAAGGGGAGGAAGAGTATTGGCATGACGGAGAGGTTCAATTGCAGGGCCAAGGATTTGTATGAAATTTTGATGGATGAGAATAGGTGGAAGGGTTTTACACAGAGCAATGCGAGAATTAGTAAGGAGGTTGGCGGTGAGTTTAGCATTTTTGATGGGTCGGTGACCGGAACTAATTTGGAGTTGCAGGAGGCTAAGTTAATTGTTCAGAGATGGAGGTTTGGGAGCTGGAATGATGGAGTTCAATCCACAGTGAGGCTTGTGTTTGAGGAGCCTGAAGCCGGTGTTACGGTTGTTAAGCTGACACATACTGATGTGCCTGAAGAGGATAGGTATGGGAATGCTACCGTGGTGGAGAACACGGAAAGGGGATGGCGGGATCTTATTTTCCAGAGGATACGTGCGGTTTTTGGTTTTGGAATTTGA >Glyma19g33140.2 sequence type=CDS gene model=Glyma19g33140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCGTTACGGCGAGGGCGACAAGCGGTGGATCGTGGAGGACCGCCCCGACGGCACCAACGTCCACAACTGGCACTGGTCCGAGACCAACTGCCTCGACTGGTCCAAAACCTTCTTCAGCAACCTCCTCTCCAACCTCCCTATCCTCCACGGCGAGGCTAACCTCTTCCTCAAAACGACGTCGCTCCGCTCCCTCGACGGCGAGGCCTACGTCAACGTCCGCAAGGGGAAAATCATCCCCGGCTACGAGATCAGCCTCACACTCAATTGGCAGGGCGAAGCCAAAGATTCCCAGGGAACCTCGCTTCTTAAAGTCGACGGCACCGTCGAGATTCCCTACATCTCCGACGAGAACGCCGACGAGGATCCCGAGGTTAGGGTTACCGTTAACGATGAGGGACCGGTTGGGATGAGGATTAAGGACGCCATGCTTTCCAAGGGGAAGCCCTTGATCTTGGAGAAGGTTAGGGTTTGGGTCCAGAGCATGGCCAAAGGTGGTCCTGTTAAGGATGAATTGGAACCCAAGAAGGTTGCGCCGTCGTTGTCGCCGTCTCCGCCGACAACGACAACAACAACAACAACGACAACGACTGCTACGAAGAAGGAGGAGAAGAAAGAGAAGGAGAAGGAGAAGGAGAAGAAGGGGAGGAAGAGTATTGGCATGACGGAGAGGTTCAATTGCAGGGCCAAGGATTTGTATGAAATTTTGATGGATGAGAATAGGTGGAAGGGTTTTACACAGAGCAATGCGAGAATTAGTAAGGAGGTTGGCGGTGAGTTTAGCATTTTTGATGGGTCGGTGACCGGAACTAATTTGGAGTTGCAGGAGGCTAAGTTAATTGTTCAGAGATGGAGGTTTGGGAGCTGGAATGATGGAGTTCAATCCACAGTGAGGCTTGTGTTTGAGGAGCCTGAAGCCGGTGTTACGGTTGTTAAGCTGACACATACTGATGTGCCTGAAGAGGATAGGTGA
>Glyma19g33140.1 sequence type=predicted peptide gene model=Glyma19g33140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARYGEGDKRWIVEDRPDGTNVHNWHWSETNCLDWSKTFFSNLLSNLPILHGEANLFLKTTSLRSLDGEAYVNVRKGKIIPGYEISLTLNWQGEAKDSQGTSLLKVDGTVEIPYISDENADEDPEVRVTVNDEGPVGMRIKDAMLSKGKPLILEKVRVWVQSMAKGGPVKDELEPKKVAPSLSPSPPTTTTTTTTTTTATKKEEKKEKEKEKEKKGRKSIGMTERFNCRAKDLYEILMDENRWKGFTQSNARISKEVGGEFSIFDGSVTGTNLELQEAKLIVQRWRFGSWNDGVQSTVRLVFEEPEAGVTVVKLTHTDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGFGI* >Glyma19g33140.2 sequence type=predicted peptide gene model=Glyma19g33140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARYGEGDKRWIVEDRPDGTNVHNWHWSETNCLDWSKTFFSNLLSNLPILHGEANLFLKTTSLRSLDGEAYVNVRKGKIIPGYEISLTLNWQGEAKDSQGTSLLKVDGTVEIPYISDENADEDPEVRVTVNDEGPVGMRIKDAMLSKGKPLILEKVRVWVQSMAKGGPVKDELEPKKVAPSLSPSPPTTTTTTTTTTTATKKEEKKEKEKEKEKKGRKSIGMTERFNCRAKDLYEILMDENRWKGFTQSNARISKEVGGEFSIFDGSVTGTNLELQEAKLIVQRWRFGSWNDGVQSTVRLVFEEPEAGVTVVKLTHTDVPEEDR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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