Glyma19g33090 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g33090

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40730633
stop:	40733069
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58030	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:21485527-21486837 FORWARD LENGTH=436	SoyBase	E_val: 4.00E-142	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR12313	Panther	RNF5	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_C6TK36	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TK36_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7KVF3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7KVF3_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33090

Paralog	Evidence	Comments
Glyma03g30190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g148900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33090

Limit To All Plant Sequences

>Glyma19g33090.4   sequence type=CDS   gene model=Glyma19g33090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGAGCCCGAAACTGGGCCCATGAGCAATGAAGCTGTGAACTTGGACGATTGGATAGGGGAGCCTCTTCAGAGAATTAGCGAAGCTGTGAGGAGGGCACGGCAAAGGTGGAGATGGCGCCACCTTCCGCTACCGCATCCTGAATTTCATGCTCACTTTCCAACTGAAGCTACCCGGCATTTTCAAATACCACCTGAGGCTCGTAATATCTCCGTGGAATTGAACCACTTTTTGGTCAATTCTGGCAATGGAAGCGCCTTGCAGGCCGGCGAAGGGAGCGTGGCGGCCGAGGAGAGAATGGAGGAGGTGCCAAAGGCGTGTGACAATGTCAATGGTGTGGCAGAGGATGAGACTTCACAGAAGAAGGAGGATGTAGAAAAGGGTAGTGGCAATGATGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTGGCTAGGGATCCTGTTGTAACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTTTGTATAGGTGGTTGCATCTGCATTCGGATGCGAAGGAATGTCCAGTTTGTAAGGGAGAGGTGACACTTAAAAGTGTTACCCCAGTATATGGCCGTGGGAACAATGTCCGTGGTCCTGAGGAGGATTCTGCTCTTAAGATCCCTCCCAGGCCCCAAGCAAAGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTTGAAGAGATGATTCGGCGTCTTGGAAGCAGGATTGATCTTACACGTGATTTGGTTCAGCCGCCTGAACCGGATGCTGCCCGTGAAACGGCTGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCGCGAGGGATGCGTAGAGAGCATCAGAATCTAGTGGCACCCCCCGAGGATGTAATGGGTTTGGCACAGAACAATGTTAATACTTCTGAGGCAGGGGATCCCCGGAGTAGGGTGCAGTCCCATTTGCTTCGAAGAACACAATCACATAGAGCAACACTTTCTACTCTTTCATCAGCACTAACTTCTGCCGAAAGGTTAGTTGAGGCATATTTCCGTAGCAATCCATTAGGTAGGAACCAAGAACAACCTCCTCCTCCAGTTGATGACAGAGATTCTTTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGTCAGCTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCGTCTAGGAGGAGGAATGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCTAGGCGTAGACGTTTGAACTGA

Predicted protein sequences of Glyma19g33090

Limit To All Plant Sequences

>Glyma19g33090.4   sequence type=predicted peptide   gene model=Glyma19g33090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEETSDAMNLDLNLGPGPEPETGPMSNEAVNLDDWIGEPLQRISEAVRRARQRWRWRHLPLPHPEFHAHFPTEATRHFQIPPEARNISVELNHFLVNSGNGSALQAGEGSVAAEERMEEVPKACDNVNGVAEDETSQKKEDVEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPVYGRGNNVRGPEEDSALKIPPRPQAKRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDLVQPPEPDAARETAERTTSLLSRFLTARGMRREHQNLVAPPEDVMGLAQNNVNTSEAGDPRSRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPPVDDRDSFSSIGAVINSESQLDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain