Glyma19g33070 - SoyBase

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Report for Sequence Feature Glyma19g33070

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40712920
stop:	40715685
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42040	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr2:17543282-17545063 FORWARD LENGTH=269	SoyBase	E_val: 5.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF08879	PFAM	WRC	JGI		ISS
UniRef100_I1N995	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N995_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P93743	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=P93743_ARATH	SoyBase	E_val: 2.00E-18	ISS

Expression Patterns of Glyma19g33070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33070

Paralog	Evidence	Comments
Glyma03g30170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g148700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33070

Limit To All Plant Sequences

>Glyma19g33070.1   sequence type=CDS   gene model=Glyma19g33070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCTTCCGCGCCTTCGTCGAGCTTGGATCGTTGCCAGCCGTCTGATCAGCCTCTCCCTTCGATCGGGAAACGAAGCAACGGCTCTGATGATCCCTCCGGCATCGGTGAAAGTGGGGCACACGGACAGCACAAACAAGCAAGACCCTTTGGACGAGGTTGTTAGAAGGGAAGGTGAGAGTGGAGAAGACTCGGGAGAGAAGGGTAATCATAGCAGAAAAGGACGCTCTTTTGGTTCGGAAAAAACACAAGCTGAGTTGTTGCCACCGTTAAGCCCTTCTTCTACTCAAGATGGGAGATGGTACGAGGGAGAGAAGGCGATTCCGCTGAAGAAAAGGAGAGGGAACTTCGAGGAGAATAATAACAATAATGCTGCTACTCATAGCAAGAAGATGAAGGCAAAGATGAAGACGAAGATGAACAAGAAATGTTCGACGCGCAACAAGGAGGATAGCATGGGAGAGGAATTAGACGAGGAAGATGAAGAAGAGAAGAAGGTAGAAGAAACAAAAGCGGAAGTGAATATTGTGAGTAAAAAGAGAGCAAGGGGTAGTGCACTCATGGAAGGTTCTAGGTGCAGTCGTGTGAATGGGAGAGGGTGGAGGTGCTGCCAACAAACGCTGGTTGGTTACTCGCTGTGTGAGCATCACTTGGGGAAGGGAAGGCTCAGAAGCATGACAAGTGTTAGAAGCCGTTCCATTGCTTCAACTGCACCAAAGGAGGTGCACGTGCACCACTTGCCTGACCCATCTTCTTCTTCTTCTTCTCCTCCTCCTTCTTTTTGTTCTCTTGATCATGAGAATCAAATTGAGTGTGTTGATAATGCTGAGCCCTTTGGGGATGAGGAGAAGAAGCCAGAGATAATAATGACGAAGAAGAGGATGAAGCTTGGCATGGTGAAAGCCCGTTCCATAAGCAGCTTGCTGGGGCAAACAAACACCCAGATTGCTGCTGTAGCTCATGAGAATAGCAAGTAA

Predicted protein sequences of Glyma19g33070

Limit To All Plant Sequences

>Glyma19g33070.1   sequence type=predicted peptide   gene model=Glyma19g33070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLPRLRRAWIVASRLISLSLRSGNEATALMIPPASVKVGHTDSTNKQDPLDEVVRREGESGEDSGEKGNHSRKGRSFGSEKTQAELLPPLSPSSTQDGRWYEGEKAIPLKKRRGNFEENNNNNAATHSKKMKAKMKTKMNKKCSTRNKEDSMGEELDEEDEEEKKVEETKAEVNIVSKKRARGSALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRSRSIASTAPKEVHVHHLPDPSSSSSSPPPSFCSLDHENQIECVDNAEPFGDEEKKPEIIMTKKRMKLGMVKARSISSLLGQTNTQIAAVAHENSK*

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