Glyma19g33040 - SoyBase

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Report for Sequence Feature Glyma19g33040

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40694699
stop:	40696402
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45730	AT	Annotation by Michelle Graham. TAIR10: Cysteine/Histidine-rich C1 domain family protein \| chr5:18551976-18553658 FORWARD LENGTH=560	SoyBase	E_val: 2.00E-66	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0047134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-disulfide reductase activity	SoyBase	N/A	ISS
PTHR13871	Panther	THIOREDOXIN	JGI		ISS
PTHR13871:SF2	Panther	THIOREDOXIN - RELATED	JGI		ISS
PF03107	PFAM	C1 domain	JGI		ISS
PF07649	PFAM	C1-like domain	JGI		ISS
UniRef100_F4KEM1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine/histidine-rich C1 domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4KEM1_ARATH	SoyBase	E_val: 9.00E-64	ISS
UniRef100_I1N993	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N993_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33040

Paralog	Evidence	Comments
Glyma03g30150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g148300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33040

Limit To All Plant Sequences

>Glyma19g33040.2   sequence type=CDS   gene model=Glyma19g33040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGATGGAGCATTTCAGCCACATCCACCCTCTTCTGTTAAAGCAGGAAGACAGCAATTACAACAACCAAGTCCTTTGCTCAGGTTGTGAAAAACTAATTTCAGGTCCTGTCTTCTGCTGCGTCCAATGCAACTACGTCCTTCACAAAAAGTGCGCACAAATTGCACGCCATGTGAAACACCCATTTCACCCTCAACACCCCCTTGTTCTCCTTTCCACCACCCCTTATGAAGGACCATACATATGTGATTCCTGTAGAGGCCTCTTCATTAACTTCGTATACCATTGTTATCATTGCAACTATGACCTTGATGTCTCATGTGGTTCTCAGTTTAACCCTGATGATGGCCACAAGCATGAGTTTTTGTCTGTGACAAATCCACAATCTTTTGTTTGTTATGCTTGTGGCATGCATGCAAACGAGGGTCTTGCTTGCTTATGCACCATTTGTCAGATTTGGGTTCATTCTAGCTGCGCTGAATTGCCTCTTGCTATTAGAATAAAAGGTCATGACCACCCTTTGAAGCTCACTTATACCCTTCATGTTTATGGTTTCTGGGGTAACTTAACTTGTGGTGTTTGTAATGAAGCAATGAGTCCAGCTTTTGCGGGTTACTTTTGCTCAACATGCAAATTTGCCGTGCATTTGAAGTGCCCGCAACAATATTTAAGAGGAGAGTACGAAGATGAGGAATCATTCACAGGCTATGAAACTGAGGAATCTCAAGATATTGATTTTACTTTTAGTTTCTTTGGTCATGAACATTTGTTGAAGTTCACGGAGGAAGAGAGTGATGATGATGTGAAATATTTTGATAAACTCTGTGATGCGTGTGTCCGACCCATCATGCCACCTTTCTTTTCCTGTGAAGAAGAAAATTGTGGCTTCTTTTTGCACCAAAGTTGTGCCGAATTACCAAGAACGAAGCAACACCCGTTTCACACGCACCCTCTAACTCTTCAATCCAAGGCTCCTTATGATGGCATTTACAAGTGCGACGGATGCAGAAGATTGAGCAATGGTTTTGTTTACCGTTGTGATGTGTGTCAATTCGACCTTGATGTTTGTTGTGGTACCCTTGAAGAGAGAATTGAACATGAAAGTCACGTGCATCCCTTGTTCCTCAAGAAGACAAGCGTTTCTAGGCAGTGCAAAGGTTGTCATCTTTGGTCGAAGCTTGTGTATGTGTGTGATGTTTGTGAGGATTTTTCTGTTGATTGTGGATGTGCTACTCTACCGAGTAAGACTTGGCACATGTATGACAAGCATCCTCTAAGTCTAAACTATTTCGTGGAAGGGAGTTTGAGGGAACATGAATGTGGCATTTGCAATGAGAAAATGTCTCCGAAGCAATGGTTTTATTATTGTGATGATTGTGACTCTGGTGCTCACCCTTCTTGTGTTGTTGGCAAGTCTAGGCGTGTGAAGTTTGGAGGCAGTTTCAAATATGATGTTCACTCACACCCTCTTGCTTTGGTTGAAGAAACTGAGCAGAACAATGAATGCGGAGCCTGTGGTGAACGCTGCAATGGATGGACACTTGAATGTGGCCAATGCAAAGGCTACTTTCACCGGGAAGGACAGTGTTTTTGGAAAGAATTTAAAAAGAGTGCAAAGTATTTGGAGTTATCAGGAATGATGAGACACAGGTATGCAGCAAACGTGTTGGCCTCCACGCCCAATGCTACCACAAACTGA

Predicted protein sequences of Glyma19g33040

Limit To All Plant Sequences

>Glyma19g33040.2   sequence type=predicted peptide   gene model=Glyma19g33040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKMEHFSHIHPLLLKQEDSNYNNQVLCSGCEKLISGPVFCCVQCNYVLHKKCAQIARHVKHPFHPQHPLVLLSTTPYEGPYICDSCRGLFINFVYHCYHCNYDLDVSCGSQFNPDDGHKHEFLSVTNPQSFVCYACGMHANEGLACLCTICQIWVHSSCAELPLAIRIKGHDHPLKLTYTLHVYGFWGNLTCGVCNEAMSPAFAGYFCSTCKFAVHLKCPQQYLRGEYEDEESFTGYETEESQDIDFTFSFFGHEHLLKFTEEESDDDVKYFDKLCDACVRPIMPPFFSCEEENCGFFLHQSCAELPRTKQHPFHTHPLTLQSKAPYDGIYKCDGCRRLSNGFVYRCDVCQFDLDVCCGTLEERIEHESHVHPLFLKKTSVSRQCKGCHLWSKLVYVCDVCEDFSVDCGCATLPSKTWHMYDKHPLSLNYFVEGSLREHECGICNEKMSPKQWFYYCDDCDSGAHPSCVVGKSRRVKFGGSFKYDVHSHPLALVEETEQNNECGACGERCNGWTLECGQCKGYFHREGQCFWKEFKKSAKYLELSGMMRHRYAANVLASTPNATTN*

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