Glyma19g33030 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g33030

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40688790
stop:	40693716
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12100	AT	Annotation by Michelle Graham. TAIR10: Cation efflux family protein \| chr3:3854741-3857270 REVERSE LENGTH=393	SoyBase	E_val: 4.00E-178	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008324	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015562	GO-mf	Annotation by Michelle Graham. GO Molecular Function: efflux transmembrane transporter activity	SoyBase	N/A	ISS
KOG1484	KOG	Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily)	JGI		ISS
PTHR11562	Panther	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	JGI		ISS
PF01545	PFAM	Cation efflux family	JGI		ISS
PF06813	PFAM	Nodulin-like	JGI		ISS
UniRef100_G7KVE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal tolerance protein n=1 Tax=Medicago truncatula RepID=G7KVE4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N992	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N992_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33030

Paralog	Evidence	Comments
Glyma03g30140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g148200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33030

Limit To All Plant Sequences

>Glyma19g33030.1   sequence type=CDS   gene model=Glyma19g33030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTCTGACTTCCATCAACGGCGATTTCGGCTTCGCCGGCGGCACCGATCGCAGATTCGCGTTTTCGCGCCAAGCCTCCTTCCAACAGCCTCACACGCCGATAGACATTCCGGCGCACGGCCACCACTACTGGTCCGCGCGTGACGATAAACCCTCCTCCGCCTCGCTCCAAAGATCCTCTCTGTCCTCCTTCGTTTTCTCCGTTTTCCGAAACGTTAGGTCCGGCCACAGGTACATGAAGAGGCTCTTTCTCTTGATCTCGCTCAATGTCGCGTACTCCACCGCCGAATTGCTCTTTGGACTCTTCACCGGTCGCGTAGGTTTGGTGTCTGATGCGGTTCACTTGACTTTTGGATGTGGTCTTCTTACATTTTCGTTATTTGTTATGGCCGCGTCTAGGAAGAAAGCCGATCGAGAGTATACTTATGGGTATAAAAGGCTAGAAGTCTTGTCTGCATTTACAAATGCCCTATTTCTTTTGTTTATGTCATTCTCCCTAGCAGTTGAGGCACTTCATGCATTCATACAAGATGAATCAGAGCACAAGCATTACTTGATTGTTTCTGCAGTGACCAATTTATTTGTGAATCTTGTTGGTGTATGGTTCTTCAGAAACTATGCTCGGATTAATCTTGCTTACAGAAATGCAGAAGATATGAATCACCACTCTGTTTTCCTGCATGTTCTTGCAGATTCCATTCGCAGTGCAGGTCTGATATTGGCATCCTGGTTATTGTCAATTGGGGTTCAGAATGCAGAAGTCTTGTGTTTAGGACTTGTTTCTGTTGCAGTTTTTATGCTTGTTCTGCCTCTCTTTAGGGCAACTGGTGGTATCTTGCTCCAAATGGCACCTCCCAGCATCCCAACTACTGCTTTGAACAAATGCTTGAGACAGATTTCTGCTCGGGAAGATGTAATGGAAGTCTCCCAGGCTCGTTTTTGGGAATTAGTGCCTGGTTATGTGGTTGGTTCACTTATAATACAGGTAAAGAAAGGGACGAACGATCGGCCAATACTAGAATTTGTGCATGGTCTATACCATGATTTGGGTGTACAGGACCTCACGGTGCAAACTGATGATGCATGA

Predicted protein sequences of Glyma19g33030

Limit To All Plant Sequences

>Glyma19g33030.1   sequence type=predicted peptide   gene model=Glyma19g33030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSLTSINGDFGFAGGTDRRFAFSRQASFQQPHTPIDIPAHGHHYWSARDDKPSSASLQRSSLSSFVFSVFRNVRSGHRYMKRLFLLISLNVAYSTAELLFGLFTGRVGLVSDAVHLTFGCGLLTFSLFVMAASRKKADREYTYGYKRLEVLSAFTNALFLLFMSFSLAVEALHAFIQDESEHKHYLIVSAVTNLFVNLVGVWFFRNYARINLAYRNAEDMNHHSVFLHVLADSIRSAGLILASWLLSIGVQNAEVLCLGLVSVAVFMLVLPLFRATGGILLQMAPPSIPTTALNKCLRQISAREDVMEVSQARFWELVPGYVVGSLIIQVKKGTNDRPILEFVHGLYHDLGVQDLTVQTDDA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain