Glyma19g33010 - SoyBase

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Report for Sequence Feature Glyma19g33010

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40679891
stop:	40684739
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42070	AT	Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 23 \| chr2:17549669-17551066 REVERSE LENGTH=280	SoyBase	E_val: 6.00E-121	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0042726	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavin-containing compound metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0047884	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FAD diphosphatase activity	SoyBase	N/A	ISS
PTHR22769	Panther	MUTT/NUDIX HYDROLASE	JGI		ISS
PF00293	PFAM	NUDIX domain	JGI		ISS
UniRef100_G7KVE3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=2 Tax=Medicago truncatula RepID=G7KVE3_MEDTR	SoyBase	E_val: 7.00E-151	ISS
UniRef100_I1N989	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N989_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33010

Paralog	Evidence	Comments
Glyma03g30130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g148100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g33010

Limit To All Plant Sequences

>Glyma19g33010.5   sequence type=transcript   gene model=Glyma19g33010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAAAATGAAGTAAAGTAATAAAAGAGAGATGCGTGCGTGTGAATCTGCTCGTTTTCAATTTTTCATGCATAAAATGCATAATCATTAACATTTAACACTGTTGATTCGTATTCTTTCCATCGTATATTTTTTCATTGTGTAGGTGATAATTTTTTATTTACAATAAAATAAAACATTAATCCATTCCGCTTCAATCCAAACATAAACTTGGTCTTATCCTTAGAAGATTTTGGATTAAGAAAAGGTGAGGGAAGAGAGTGGTTCTTTTCTTTTGCTCGTTAAATCGAATGATTTGAATTCGACACGGGCACAGTAAAAAAGGGTTTAGTTGTGTTCGAAATTCGAAATTCCAATCGCAAAGCATAAGAAAAATTAAGAAAAAATGACGGTGAAACCAATCCATCTTCAGATATGTGGATTGGTTAGTCAACGATGGAGTTGGAAACCCCGCACAGTCTCATCCCTCTCCTCATTTTCCCCAATTCCATACCCTAACCCTTATTCCAAACTGCTTCCCACCAACACCGTCGCTCGCAGGGTTCGATTCGCGCCATTTCACGCTTCCTCGTCGCCGCTTCCTTCTGCCGGTATTGTTCGAAACATCAAGTTCTGTCAGTGGTGTGGTGGTTCCACGAAGCATGATATTCCTGAAGGGGAGGAAAGGTTGAGAGCAATATGTACGGTTTGCGGGAAGATCGCGTATCAAAATCCGAAGATGGTAGTTGGCTGCCTCATTGAACATGATAACAAGGTCCTTCTTTGCAAGAGGAGTATTCAACCATCTCATGGCCTTTGGACCCTTCCTGCTGGTTATTTGGAAATTGGAGAGTCTGCTGTGGAAGGTGCCATTAGGGAAACAAGGGAGGAAGCAAATGCAGACGTAGAAGTAATTTCTCCATTTGCCCAATTGGATATTCCTTTAATTGGCCAAAGTTACATGATATTCTTAGCAAAGCTGAAGAAGCACCATTTTTCACCTGGTCCAGAATCATCGGCATGCCAACTTTTTCCACTTGATGATATACCTTTCAATTCTTTATCCTTTTCATCAATGGTGGTTACCTTAAGTTTGTATGTTGAGGATATTAAGGCTGGAAAGCTCAAATTCCATTATGGAACCATTAACAAAAGGCCGGGTACAAGTCCTTCTGATATTCGTGCCTATACACTGGATCACCATATGCATTCATGAGTCGTGATAAGCAGAGGATTATTAAGAGGAAGTTGTTGGAAGATCCAAAAGAACTCATTGCAGCATTCTTATTGATTTTCCATCCCGATTAGCCAATAATACATCTATGATCATGATTTTCTCAACATTTTGCATGTTACAATAGAGTATCAGAAGATTGTAAGTTGAAAATTTTCTTCGGCCAGCCTGAAGATTGTAAGTTGAAAATTTTCTTCGGCCAGCCAGAAGATTGCATGTCTTCTGCAAAGAATTTCCGTGTTACTGGCTTGAACTCACGCTTGTCACAAGCTTAAATTCAACATTGTCCCAAGGTAGATGAGCAGTGTTCTAATTCAAGAAGGGCATGTTAGACCAATGGTCATCATTACCTGCGAATTCCTCAGCTGCTCTTGTGGACCTACCATATCAAATTGGTAGGTAGTTGCGTTGCAGAAAGAAAGATTGAGACTTGTTTTGCAATCTGCATTGGAATTGTAAACATAAACACTCATTGAGATAAATGTAATTCTTTTTGAAAATTTTCCCCATTTCAAAAATCAGGGACTCTTGACGCACTTTGGTTAACATGTTTGATGCAATATGGTAACATAATCAAGACATGGGCACGATCTTCAACTCAGAAAGCTCCATTTTTAGTAGAACTTGGTGATTTTTACTCGTTTTTTTTCTCTTAACCACACATTTATCCTCTTGTATACCGAGGTCAGTTCAAGACTCAGTGTGCAGGCAATGGCATTTGTTATTAGGAGCAATCTATTTTCCAAATAGATACTATTCAACTTAATAGTAAAATAGAAGGTTT

Coding sequences of Glyma19g33010

Limit To All Plant Sequences

>Glyma19g33010.4   sequence type=CDS   gene model=Glyma19g33010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGTGAAACCAATCCATCTTCAGATATGTGGATTGGTTAGTCAACGATGGAGTTGGAAACCCCGCACAGTCTCATCCCTCTCCTCATTTTCCCCAATTCCATACCCTAACCCTTATTCCAAACTGCTTCCCACCAACACCGTCGCTCGCAGGGTTCGATTCGCGCCATTTCACGCTTCCTCGTCGCCGCTTCCTTCTGCCGGTATTGTTCGAAACATCAAGTTCTGTCAGTGGTGTGGTGGTTCCACGAAGCATGATATTCCTGAAGGGGAGGAAAGGTTGAGAGCAATATGTACGGTTTGCGGGAAGATCGCGTATCAAAATCCGAAGATGGTAGTTGGCTGCCTCATTGAACATGATAACAAGGTCCTTCTTTGCAAGAGGAGTATTCAACCATCTCATGGCCTTTGGACCCTTCCTGCTGGTTATTTGGAAATTGGAGAGTCTGCTGTGGAAGGTGCCATTAGGGAAACAAGGGAGGAAGCAAATGCAGACGTAGAAGTAATTTCTCCATTTGCCCAATTGGATATTCCTTTAATTGGCCAAAGTTACATGATATTCTTAGCAAAGCTGAAGAAGCACCATTTTTCACCTGGTCCAGAATCATCGGCATGCCAACTTTTTCCACTTGATGATATACCTTTCAATTCTTTATCCTTTTCATCAATGGTGGTTACCTTAAGTTTGTATGTTGAGGATATTAAGGCTGGAAAGCTCAAATTCCATTATGGAACCATTAACAAAAGGCCGGGTACAAGTCCTTCTGATATTCGTGCCTATACACTGGATCACCATATGCATTCATGA

>Glyma19g33010.5   sequence type=CDS   gene model=Glyma19g33010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGTGAAACCAATCCATCTTCAGATATGTGGATTGGTTAGTCAACGATGGAGTTGGAAACCCCGCACAGTCTCATCCCTCTCCTCATTTTCCCCAATTCCATACCCTAACCCTTATTCCAAACTGCTTCCCACCAACACCGTCGCTCGCAGGGTTCGATTCGCGCCATTTCACGCTTCCTCGTCGCCGCTTCCTTCTGCCGGTATTGTTCGAAACATCAAGTTCTGTCAGTGGTGTGGTGGTTCCACGAAGCATGATATTCCTGAAGGGGAGGAAAGGTTGAGAGCAATATGTACGGTTTGCGGGAAGATCGCGTATCAAAATCCGAAGATGGTAGTTGGCTGCCTCATTGAACATGATAACAAGGTCCTTCTTTGCAAGAGGAGTATTCAACCATCTCATGGCCTTTGGACCCTTCCTGCTGGTTATTTGGAAATTGGAGAGTCTGCTGTGGAAGGTGCCATTAGGGAAACAAGGGAGGAAGCAAATGCAGACGTAGAAGTAATTTCTCCATTTGCCCAATTGGATATTCCTTTAATTGGCCAAAGTTACATGATATTCTTAGCAAAGCTGAAGAAGCACCATTTTTCACCTGGTCCAGAATCATCGGCATGCCAACTTTTTCCACTTGATGATATACCTTTCAATTCTTTATCCTTTTCATCAATGGTGGTTACCTTAAGTTTGTATGTTGAGGATATTAAGGCTGGAAAGCTCAAATTCCATTATGGAACCATTAACAAAAGGCCGGGTACAAGTCCTTCTGATATTCGTGCCTATACACTGGATCACCATATGCATTCATGA

Predicted protein sequences of Glyma19g33010

Limit To All Plant Sequences

>Glyma19g33010.4   sequence type=predicted peptide   gene model=Glyma19g33010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVKPIHLQICGLVSQRWSWKPRTVSSLSSFSPIPYPNPYSKLLPTNTVARRVRFAPFHASSSPLPSAGIVRNIKFCQWCGGSTKHDIPEGEERLRAICTVCGKIAYQNPKMVVGCLIEHDNKVLLCKRSIQPSHGLWTLPAGYLEIGESAVEGAIRETREEANADVEVISPFAQLDIPLIGQSYMIFLAKLKKHHFSPGPESSACQLFPLDDIPFNSLSFSSMVVTLSLYVEDIKAGKLKFHYGTINKRPGTSPSDIRAYTLDHHMHS*

>Glyma19g33010.5   sequence type=predicted peptide   gene model=Glyma19g33010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVKPIHLQICGLVSQRWSWKPRTVSSLSSFSPIPYPNPYSKLLPTNTVARRVRFAPFHASSSPLPSAGIVRNIKFCQWCGGSTKHDIPEGEERLRAICTVCGKIAYQNPKMVVGCLIEHDNKVLLCKRSIQPSHGLWTLPAGYLEIGESAVEGAIRETREEANADVEVISPFAQLDIPLIGQSYMIFLAKLKKHHFSPGPESSACQLFPLDDIPFNSLSFSSMVVTLSLYVEDIKAGKLKFHYGTINKRPGTSPSDIRAYTLDHHMHS*

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