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Report for Sequence Feature Glyma19g32980

Feature Type:gene_model
Chromosome:Gm19
Start:40654122
stop:40658338
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g32980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06750AT Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr5:2086403-2088245 REVERSE LENGTH=393 SoyBaseE_val: 0ISS
GO:0006470GO-bp Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0008287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
KOG0700 KOG Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase JGI ISS
PTHR13832Panther PROTEIN PHOSPHATASE 2C JGI ISS
PTHR13832:SF97Panther PROTEIN PHOSPHATASE-2C JGI ISS
PF00481PFAM Protein phosphatase 2C JGI ISS
UniRef100_B9SXJ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9SXJ0_RICCO SoyBaseE_val: 0ISS
UniRef100_I1N985UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N985_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g32980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g32980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g147800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g32980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g32980
>Glyma19g32980.1   sequence type=CDS   gene model=Glyma19g32980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCGTGGCTTGCAAGACTAGTTTCGTCGTGCTTGAGGCCTGTGAGGCGCTATGCCCGCATGAGCAAAGATGGTGATGATGATGATGATGGTGTTGATGAGTCTACTTCATCAGTTGAAGACTCTCTTCTGTGGCGTAGAGACCTTTTGAAACATTCTTGTGGTGAATTCTCCTTTGCTGTGGTTCAGGCCAATGAAGTTATTGAGGATCATAGTCAGGTCGAGATTGGCTCTGACGCCATCTTTGTTGGGGTTTATGATGGCCATGGTGGTCCTGAAGCTTCACGGTTCGTCAGAGATCACCTCTTCCAGCACCTAATGAGGATTGCTCAGGATAATGGAAATATCTCTGAAGAAATTCTCAGAGGTGCTGTTACTGCTACAGAGGATGGGTTTATGAAACTTGTTCATAGGAGTTATATGATAAAGCCTTTGATTGCATCAATTGGTTCCTGTTGTCTGGTTGGTGTTATCTGGAAAGGGACTCTATATATCGCCAATCTTGGAGACTCCCGTGCCGTTGTTGGTTCTTTAGGTAGATCTAACAAGATCATTGCCGAGCAGCTGACTAGAGAGCACAATGCTTGTAGGGAGGAGATTAGACAAGAACTTAGGTCTTTGCATCCACAAGATTCACAAATTGTAGTAATGAATCGTGGAACATGGCGTGTCAAAGGCATCATCCAGGTATCGAGATCCATAGGAGATGCATATTTGAAGTGGCCGCAGTTCTCTCTCGATCCATCATTCCCACGTTTCCACATGCCTGAACCTATAACCCAACCTGTGCTAACAGCAGAACCATCTCTATGTTCAAGAGTTTTGCAGCCCCATGACAAATTTCTTATATTTGCGTCTGATGGACTTTGGGAATACATGACAAATCAGCAAGCAGCCGAGATTGTTCAGAAGAACCCACGAAATGGGGTTGCAAGAAAACTTGTTAAGGCTGCTCTAAAGGAGGCAGCTAATAAAAGGAAAATGAAATATAAAGAGCTTCAGAAGATTGAGAAAGGAAACAGAAGGATTTTTCATGATGATATCACTGTGATTGTTGTCTTCATAGACCATGAGTTGCTCGGGAAGAAAATTACTGTGCCAGAGTTGTCCATCAGAGGGTTCATTGACTCGGCTGGACCGTCAAATTTTAAAAGTGTCCAGGAGTTTATGTGA
Predicted protein sequences of Glyma19g32980
>Glyma19g32980.1   sequence type=predicted peptide   gene model=Glyma19g32980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSWLARLVSSCLRPVRRYARMSKDGDDDDDGVDESTSSVEDSLLWRRDLLKHSCGEFSFAVVQANEVIEDHSQVEIGSDAIFVGVYDGHGGPEASRFVRDHLFQHLMRIAQDNGNISEEILRGAVTATEDGFMKLVHRSYMIKPLIASIGSCCLVGVIWKGTLYIANLGDSRAVVGSLGRSNKIIAEQLTREHNACREEIRQELRSLHPQDSQIVVMNRGTWRVKGIIQVSRSIGDAYLKWPQFSLDPSFPRFHMPEPITQPVLTAEPSLCSRVLQPHDKFLIFASDGLWEYMTNQQAAEIVQKNPRNGVARKLVKAALKEAANKRKMKYKELQKIEKGNRRIFHDDITVIVVFIDHELLGKKITVPELSIRGFIDSAGPSNFKSVQEFM*






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