SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42120 | AT | Annotation by Michelle Graham. TAIR10: DNA polymerase delta small subunit | chr2:17563282-17565965 REVERSE LENGTH=440 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity | SoyBase | N/A | ISS |
| KOG2732 | KOG | DNA polymerase delta, regulatory subunit 55 | JGI | ISS | |
| PTHR10416 | Panther | DNA POLYMERASE DELTA SMALL SUBUNIT | JGI | ISS | |
| PF04042 | PFAM | DNA polymerase alpha/epsilon subunit B | JGI | ISS | |
| UniRef100_G7KVD6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase delta small subunit n=1 Tax=Medicago truncatula RepID=G7KVD6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N983 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N983_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g32950 not represented in the dataset |
Glyma19g32950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g30080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g147500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g32950.2 sequence type=transcript gene model=Glyma19g32950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGTACATGCATTGATGCCACAAAGAGAGGATGACCGGAGAATGACAGTATTGCTACAAAGAGAAATTGTAGTTCTTGCCAAGTCGAAAGAAACAAACAATTGGAGCGAGGCAAGTGTTCCCGCCATGGGAATGGAGCGAGTGCAGTGTGCCTATGCCTCTCTGGACGAAGCGTTCGAAATAGGGAAAGAGACGTATCAGGGTCAGCAATACAGCCAGATTTACTTCGCGCGCCTTCATTTGATGCGAACACTCTTGTATTCCCTCATTCCTCATTGGAAACCCAATTCTCCCGTGTGCACGGTGCTGGGATTGGAAGAGGGCAAGGAGTGTGTCATTGTTGGAACCCTCTATAAACACATGAAGCTCAAACCTTGCATTCTTGATGAGTATTCTAAGGAGAGATCAGTGGTTCCACTCGTCAAGCCACATAACTTCATACACCCGGATGATCACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGTGGGTATATCATTTCGCCATCTGAATATGTAACAGGAATTGTGGTTGCTTTACTTGGAAAGGAAACGGGGGCAGGCGACTTTTTGGTTCAGGATGTCCTACAAGCTGGCTTACCACCACAGATAGAATTTCCCCTTAAATCAAGGGAAGACAAATATGTTGTTCTTGTGTCAGGGTTAAGTGTTGGGAGCAGCAGCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACAGGGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCATCACAAATTGCTCAAGTTGTCTTTGCTGGAAATTTAATTGAGATACCTCACAGACTTCTTAATGGACAGAATTTGGCTTCAAAGGATCTCTCAAGAATGGCTGAGCCAATAAAGGAGCTAGATATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATCATGCCAGGACCCAGTGACCCTGCTAATTTCTCATTACCACAGCAGTCATTGCATAGATGCCTTTTCCCTGGGTCGTCAACGTATAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCCGGCCAAAATGTAGATGATCTTGAGAAGTATTCAGAGGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTGGCACCCACTGCACCTAATACTCTTGGATGCTATCCTTATACTGATAAGGATCCTTTCTTCATTGAGAGCTGTCCTCATGTTTACTTTATTGGAAATCAAGATAAATTTGAAACTCGTGTCATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCGTATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGCTAAATCTGAGGGACCTTGATTGTTATGCTCTCAGTTTTGGAACTCAATTCAGCTCATAAGAATGCAGAATGAAGTTGTTGTGGTATTTAAATTTGTAAGCTTCTAAATTTTGAACAGTTCTAGCATGAGCGTAGTGTTTATACAATTATAGCTTCTCTAAACTGAGAAAATGTATCTTGTAAAAACTGCTCATAGGAACATTCTCATGTAAAAACTGCTCTTAAATTAGTAGTTAGTGTGGCTTCTCCACAATTATAAATACA
>Glyma19g32950.1 sequence type=CDS gene model=Glyma19g32950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAATGGAGCGAGTGCAGTGTGCCTATGCCTCTCTGGACGAAGCGTTCGAAATAGGGAAAGAGACGTATCAGGGTCAGCAATACAGCCAGATTTACTTCGCGCGCCTTCATTTGATGCGAACACTCTTGTATTCCCTCATTCCTCATTGGAAACCCAATTCTCCCGTGTGCACGGTGCTGGGATTGGAAGAGGGCAAGGAGTGTGTCATTGTTGGAACCCTCTATAAACACATGAAGCTCAAACCTTGCATTCTTGATGAGTATTCTAAGGAGAGATCAGTGGTTCCACTCGTCAAGCCACATAACTTCATACACCCGGATGATCACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGTGGGTATATCATTTCGCCATCTGAATATGTAACAGGAATTGTGGTTGCTTTACTTGGAAAGGAAACGGGGGCAGGCGACTTTTTGGTTCAGGATGTCCTACAAGCTGGCTTACCACCACAGATAGAATTTCCCCTTAAATCAAGGGAAGACAAATATGTTGTTCTTGTGTCAGGGTTAAGTGTTGGGAGCAGCAGCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACAGGGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCATCACAAATTGCTCAAGTTGTCTTTGCTGGAAATTTAATTGAGATACCTCACAGACTTCTTAATGGACAGAATTTGGCTTCAAAGGATCTCTCAAGAATGGCTGAGCCAATAAAGGAGCTAGATATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATCATGCCAGGACCCAGTGACCCTGCTAATTTCTCATTACCACAGCAGTCATTGCATAGATGCCTTTTCCCTGGGTCGTCAACGTATAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCCGGCCAAAATGTAGATGATCTTGAGAAGTATTCAGAGGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTGGCACCCACTGCACCTAATACTCTTGGATGCTATCCTTATACTGATAAGGATCCTTTCTTCATTGAGAGCTGTCCTCATGTTTACTTTATTGGAAATCAAGATAAATTTGAAACTCGTGTCATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCGTATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGCTAAATCTGAGGGACCTTGATTGTTATGCTCTCAGTTTTGGAACTCAATTCAGCTCATAA >Glyma19g32950.2 sequence type=CDS gene model=Glyma19g32950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGTACATGCATTGATGCCACAAAGAGAGGATGACCGGAGAATGACAGTATTGCTACAAAGAGAAATTGTAGTTCTTGCCAAGTCGAAAGAAACAAACAATTGGAGCGAGGCAAGTGTTCCCGCCATGGGAATGGAGCGAGTGCAGTGTGCCTATGCCTCTCTGGACGAAGCGTTCGAAATAGGGAAAGAGACGTATCAGGGTCAGCAATACAGCCAGATTTACTTCGCGCGCCTTCATTTGATGCGAACACTCTTGTATTCCCTCATTCCTCATTGGAAACCCAATTCTCCCGTGTGCACGGTGCTGGGATTGGAAGAGGGCAAGGAGTGTGTCATTGTTGGAACCCTCTATAAACACATGAAGCTCAAACCTTGCATTCTTGATGAGTATTCTAAGGAGAGATCAGTGGTTCCACTCGTCAAGCCACATAACTTCATACACCCGGATGATCACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGTGGGTATATCATTTCGCCATCTGAATATGTAACAGGAATTGTGGTTGCTTTACTTGGAAAGGAAACGGGGGCAGGCGACTTTTTGGTTCAGGATGTCCTACAAGCTGGCTTACCACCACAGATAGAATTTCCCCTTAAATCAAGGGAAGACAAATATGTTGTTCTTGTGTCAGGGTTAAGTGTTGGGAGCAGCAGCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACAGGGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCATCACAAATTGCTCAAGTTGTCTTTGCTGGAAATTTAATTGAGATACCTCACAGACTTCTTAATGGACAGAATTTGGCTTCAAAGGATCTCTCAAGAATGGCTGAGCCAATAAAGGAGCTAGATATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATCATGCCAGGACCCAGTGACCCTGCTAATTTCTCATTACCACAGCAGTCATTGCATAGATGCCTTTTCCCTGGGTCGTCAACGTATAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCCGGCCAAAATGTAGATGATCTTGAGAAGTATTCAGAGGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTGGCACCCACTGCACCTAATACTCTTGGATGCTATCCTTATACTGATAAGGATCCTTTCTTCATTGAGAGCTGTCCTCATGTTTACTTTATTGGAAATCAAGATAAATTTGAAACTCGTGTCATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCGTATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGCTAAATCTGAGGGACCTTGATTGTTATGCTCTCAGTTTTGGAACTCAATTCAGCTCATAA
>Glyma19g32950.1 sequence type=predicted peptide gene model=Glyma19g32950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGMERVQCAYASLDEAFEIGKETYQGQQYSQIYFARLHLMRTLLYSLIPHWKPNSPVCTVLGLEEGKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFIHPDDHLVLEDESGRVKLSGYIISPSEYVTGIVVALLGKETGAGDFLVQDVLQAGLPPQIEFPLKSREDKYVVLVSGLSVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIAQVVFAGNLIEIPHRLLNGQNLASKDLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSTYNTFRSCTNPHCFELDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPYTDKDPFFIESCPHVYFIGNQDKFETRVIKGSEGQLVRLVCVPKFSETGVAVMLNLRDLDCYALSFGTQFSS* >Glyma19g32950.2 sequence type=predicted peptide gene model=Glyma19g32950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVHALMPQREDDRRMTVLLQREIVVLAKSKETNNWSEASVPAMGMERVQCAYASLDEAFEIGKETYQGQQYSQIYFARLHLMRTLLYSLIPHWKPNSPVCTVLGLEEGKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFIHPDDHLVLEDESGRVKLSGYIISPSEYVTGIVVALLGKETGAGDFLVQDVLQAGLPPQIEFPLKSREDKYVVLVSGLSVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIAQVVFAGNLIEIPHRLLNGQNLASKDLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSTYNTFRSCTNPHCFELDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPYTDKDPFFIESCPHVYFIGNQDKFETRVIKGSEGQLVRLVCVPKFSETGVAVMLNLRDLDCYALSFGTQFSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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