Glyma19g32930 - SoyBase

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Report for Sequence Feature Glyma19g32930

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40622192
stop:	40623153
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g32930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12120	AT	Annotation by Michelle Graham. TAIR10: fatty acid desaturase 2 \| chr3:3860592-3861743 REVERSE LENGTH=383	SoyBase	E_val: 8.00E-154	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016717	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	SoyBase	N/A	ISS
GO:0016720	GO-mf	Annotation by Michelle Graham. GO Molecular Function: delta12-fatty acid dehydrogenase activity	SoyBase	N/A	ISS
GO:0045485	GO-mf	Annotation by Michelle Graham. GO Molecular Function: omega-6 fatty acid desaturase activity	SoyBase	N/A	ISS
PTHR19353	Panther	FATTY ACID DESATURASE 2	JGI		ISS
PF00487	PFAM	Fatty acid desaturase	JGI		ISS
PF11960	PFAM	Domain of unknown function (DUF3474)	JGI		ISS
UniRef100_I1N981	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N981_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q19AK7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Microsomal oleate desaturase FAD2-3 n=1 Tax=Glycine max RepID=Q19AK7_SOYBN	SoyBase	E_val: 2.00E-171	ISS

Expression Patterns of Glyma19g32930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g32930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g147300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g32930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g32930

Limit To All Plant Sequences

>Glyma19g32930.1   sequence type=CDS   gene model=Glyma19g32930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGACACTATGAAACGGGTGCCAATTGAAAAACCTCCATTTACTCTCAGCCAAATCAAGAAGGCTATTCCACCACACTTTTTCCAGCGTTCTGTTCTGCGCTCATTCTCATATCTCATTTATGACCTTACCATAGCCTTCTGCCTCTATTACATTGCCACCGATTACTTCCACAACCTTCCTCATCCTCTCACTTTCTTGGCATGGCCAATCTATTGGGCTGTGCAAGGATTCACCCTAGCTGGTCTTTGGGTCATTGCACATGACTGTGGCCACCATGCATTCAGAGATTACCAACTTCTTGATGATAACGTTGGCCTTGTTCTCCACTCTGCTCTATTAGTCCCATACTTTTCATGGAAATACAGCCATCGCCGTCACCACTCCAACACAGGTTCTCTTGAGCGAGATGAAGTGTTTGTACCAAAGCAGAAGTCTAGTATCAAGTGGCTATCTAAATACCTAAACAATCCACCAGGGAGAGTTTTCACACTTGCTGTTACCATCACACTCGGTTGGCCCATGTACCTAACTTTCAATGTTTCTTGTAGCAAAAGGGCTTGCCTGGGTGGTTTATGTTTATGGATTTCCAATGCTTGTGGTCAATGGGTGTTGGTCACAATCTTGCAGCACACTCACGCTGCATTGCCGCACTACAATTTCTCTGAGTGGGACTGGCTCAGAGGAGCTTTAGCAACAGTAGTGGATAGAGATTATGGAATCCTGAATAAGGTTCTCCATAATATTACAGGCACACATGTGGTGCATCACTTGTTCTCCACAATGCCACATTATCATGCAATGGACGCTACAAAGGCAATAAAGCCCATTTTGGGAGAGTATTATCGGTTTGACGAGACCCCATTTGTCAAGGCAATGTGGAGAGAGGCAAGAGAGTGTATTTATGTGGAACCAGATACTGAGAACAAA

Predicted protein sequences of Glyma19g32930

Limit To All Plant Sequences

>Glyma19g32930.1   sequence type=predicted peptide   gene model=Glyma19g32930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDTMKRVPIEKPPFTLSQIKKAIPPHFFQRSVLRSFSYLIYDLTIAFCLYYIATDYFHNLPHPLTFLAWPIYWAVQGFTLAGLWVIAHDCGHHAFRDYQLLDDNVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSSIKWLSKYLNNPPGRVFTLAVTITLGWPMYLTFNVSCSKRACLGGLCLWISNACGQWVLVTILQHTHAALPHYNFSEWDWLRGALATVVDRDYGILNKVLHNITGTHVVHHLFSTMPHYHAMDATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDTENK

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