Glyma19g32780 - SoyBase

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Report for Sequence Feature Glyma19g32780

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40484870
stop:	40488036
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g32780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42210	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein \| chr2:17590600-17591591 FORWARD LENGTH=173	SoyBase	E_val: 7.00E-76	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005744	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex	SoyBase	N/A	ISS
GO:0005747	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009527	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid outer membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015450	GO-mf	Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	SoyBase	N/A	ISS
KOG3225	KOG	Mitochondrial import inner membrane translocase, subunit TIM22	JGI		ISS
PTHR14110	Panther	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE TIM22	JGI		ISS
PF02466	PFAM	Tim17/Tim22/Tim23 family	JGI		ISS
UniRef100_A2Q4T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase, subunit Tim17/22 n=2 Tax=Medicago truncatula RepID=A2Q4T7_MEDTR	SoyBase	E_val: 2.00E-88	ISS
UniRef100_C6SX98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SX98_SOYBN	SoyBase	E_val: 4.00E-111	ISS

Expression Patterns of Glyma19g32780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g32780

Paralog	Evidence	Comments
Glyma03g29880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g32780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g145900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g32780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g32780

Limit To All Plant Sequences

>Glyma19g32780.4   sequence type=transcript   gene model=Glyma19g32780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAAAGTATATTTAAAAAAGAAATTGAAAATATAATAAAATTTTCTCAACAAGAATAGTGTAGGCAAAAGTAACTGCAGCAGCGCTGAGTCGAGGGCGTTCAGTGTTCACCACAGTTTACACACGAGTACCCATTTTCTCTTCTCAATTTCTCAGAGTGTGCAGAGAAAATCATGGTGGACGCAGCAGAACGTAGGTACTTGGAGGATGACGATTCATCACTCATGAAAACTATTAAGGGGGCAACAACTGGTTTAGTTGCTGGCACTATCTGGGGGACCGTAGTTGCCACCTGGTATGATGTCCCTCGTGTAGAGAGAAATGTTGCTCTTCCAGGGCTGATTAGGACTTTCAAGATGATGGGCAACTATGGTTTGACCTTTGCTGCCATAGGAGGAGTCTACATAGGTGTGGAGCAGTTGGTGCAAAACTATAGGATGAAGAGGGATTTAGTCAATGGAGCTGTTGGCGGATTTGTTGCTGGTGCAACTATTCTGGGTTACAGAGGAAGGAGCATCAAAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACATCTGCATTCCTTGATTTCGGTGATCAGACAATAAAACATGATACTGGGAAGGAGTACGCGGCTTACACCACAAAGAAAAGACCCAGTACTGAAGCATAATTGTTAATGTGCACTTTTATGATTGAAGACATTTCAAGTTGATAGGAAAGAGTGGATCACTCTTTTGTTGACCCAGTTGTTTGTTGAGTTGGAATTACATACTGGGCTATCTTTCCATATTGTTTCTTTTGTAAGTTGCTGGTGCTGAACTGGTTAAATTCCAATAAATGTGCTATTGTGTTAGTTCACCATAACAAATTACTCAATAGACGATTCTTCCTTGGATGGAGTGAATGAAACCAAGAAGCGGAAAATTGTAGAGATTGGTGTTAAGGCTGAGATTCTCAATACAATTTGAATCATGATTCTTAAGGTATGTTGATACTGCACCAACGATTA

>Glyma19g32780.5   sequence type=transcript   gene model=Glyma19g32780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAAAGTATATTTAAAAAAGAAATTGAAAATATAATAAAATTTTCTCAACAAGAATAGTGTAGGCAAAAGTAACTGCAGCAGCGCTGAGTCGAGGGCGTTCAGTGTTCACCACAGTTTACACACGAGTACCCATTTTCTCTTCTCAATTTCTCAGAGAGAAAATCATGGTGGACGCAGCAGAACGTAGGTACTTGGAGGATGACGATTCATCACTCATGAAAACTATTAAGGGGGCAACAACTGGTTTAGTTGCTGGCACTATCTGGGGGACCGTAGTTGCCACCTGGTATGATGTCCCTCGTGTAGAGAGAAATGTTGCTCTTCCAGGGCTGATTAGGACTTTCAAGATGATGGGCAACTATGGTTTGACCTTTGCTGCCATAGGAGGAGTCTACATAGGTGTGGAGCAGTTGGTGCAAAACTATAGGATGAAGAGGGATTTAGTCAATGGAGCTGTTGGCGGATTTGTTGCTGGTGCAACTATTCTGGGTTACAGAGGAAGGAGCATCAAAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACATCTGCATTCCTTGATTTCGGTGATCAGACAATAAAACATGATACTGGGAAGGAGTACGCGGCTTACACCACAAAGAAAAGACCCAGTACTGAAGCATAATTGTTAATGTGCACTTTTATGATTGAAGACATTTCAAGTTGATAGGAAAGAGTGGATCACTCTTTTGTTGACCCAGTTGTTTGTTGAGTTGGAATTACATACTGGGCTATCTTTCCATATTGTTTCTTTTGTAAGTTGCTGGTGCTGAACTGGTTAAATTCCAATAAATGTGCTATTGTGTTAGTTCACCATAACAAATTACTCAATAGACGATTCTTCCTTGGATGGAGTGAATGAAACCAAGAAGCGGAAAATTGTAGAGATTGGTGTTAAGGCTGAGATTCTCAATACAATTTGAATCATGATTCTTAAGGTATGTTGATACTGCACCAACGATTA

Coding sequences of Glyma19g32780

Limit To All Plant Sequences

>Glyma19g32780.1   sequence type=CDS   gene model=Glyma19g32780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGACGCAGCAGAACGTAGGTACTTGGAGGATGACGATTCATCACTCATGAAAACTATTAAGGGGGCAACAACTGGTTTAGTTGCTGGCACTATCTGGGGGACCGTAGTTGCCACCTGGTATGATGTCCCTCGTGTAGAGAGAAATGTTGCTCTTCCAGGGCTGATTAGGACTTTCAAGATGATGGGCAACTATGGTTTGACCTTTGCTGCCATAGGAGGAGTCTACATAGGTGTGGAGCAGTTGGTGCAAAACTATAGGATGAAGAGGGATTTAGTCAATGGAGCTGTTGGCGGATTTGTTGCTGGTGCAACTATTCTGGGTTACAGAGGAAGGAGCATCAAAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACATCTGCATTCCTTGATTTCGGTGATCAGACAATAAAACATGATACTGGGAAGGAGTACGCGGCTTACACCACAAAGAAAAGACCCAGTACTGAAGCATAA

>Glyma19g32780.4   sequence type=CDS   gene model=Glyma19g32780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGACGCAGCAGAACGTAGGTACTTGGAGGATGACGATTCATCACTCATGAAAACTATTAAGGGGGCAACAACTGGTTTAGTTGCTGGCACTATCTGGGGGACCGTAGTTGCCACCTGGTATGATGTCCCTCGTGTAGAGAGAAATGTTGCTCTTCCAGGGCTGATTAGGACTTTCAAGATGATGGGCAACTATGGTTTGACCTTTGCTGCCATAGGAGGAGTCTACATAGGTGTGGAGCAGTTGGTGCAAAACTATAGGATGAAGAGGGATTTAGTCAATGGAGCTGTTGGCGGATTTGTTGCTGGTGCAACTATTCTGGGTTACAGAGGAAGGAGCATCAAAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACATCTGCATTCCTTGATTTCGGTGATCAGACAATAAAACATGATACTGGGAAGGAGTACGCGGCTTACACCACAAAGAAAAGACCCAGTACTGAAGCATAA

>Glyma19g32780.5   sequence type=CDS   gene model=Glyma19g32780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGACGCAGCAGAACGTAGGTACTTGGAGGATGACGATTCATCACTCATGAAAACTATTAAGGGGGCAACAACTGGTTTAGTTGCTGGCACTATCTGGGGGACCGTAGTTGCCACCTGGTATGATGTCCCTCGTGTAGAGAGAAATGTTGCTCTTCCAGGGCTGATTAGGACTTTCAAGATGATGGGCAACTATGGTTTGACCTTTGCTGCCATAGGAGGAGTCTACATAGGTGTGGAGCAGTTGGTGCAAAACTATAGGATGAAGAGGGATTTAGTCAATGGAGCTGTTGGCGGATTTGTTGCTGGTGCAACTATTCTGGGTTACAGAGGAAGGAGCATCAAAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACATCTGCATTCCTTGATTTCGGTGATCAGACAATAAAACATGATACTGGGAAGGAGTACGCGGCTTACACCACAAAGAAAAGACCCAGTACTGAAGCATAA

Predicted protein sequences of Glyma19g32780

Limit To All Plant Sequences

>Glyma19g32780.1   sequence type=predicted peptide   gene model=Glyma19g32780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDAAERRYLEDDDSSLMKTIKGATTGLVAGTIWGTVVATWYDVPRVERNVALPGLIRTFKMMGNYGLTFAAIGGVYIGVEQLVQNYRMKRDLVNGAVGGFVAGATILGYRGRSIKTALSAGSALAFTSAFLDFGDQTIKHDTGKEYAAYTTKKRPSTEA*

>Glyma19g32780.4   sequence type=predicted peptide   gene model=Glyma19g32780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDAAERRYLEDDDSSLMKTIKGATTGLVAGTIWGTVVATWYDVPRVERNVALPGLIRTFKMMGNYGLTFAAIGGVYIGVEQLVQNYRMKRDLVNGAVGGFVAGATILGYRGRSIKTALSAGSALAFTSAFLDFGDQTIKHDTGKEYAAYTTKKRPSTEA*

>Glyma19g32780.5   sequence type=predicted peptide   gene model=Glyma19g32780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDAAERRYLEDDDSSLMKTIKGATTGLVAGTIWGTVVATWYDVPRVERNVALPGLIRTFKMMGNYGLTFAAIGGVYIGVEQLVQNYRMKRDLVNGAVGGFVAGATILGYRGRSIKTALSAGSALAFTSAFLDFGDQTIKHDTGKEYAAYTTKKRPSTEA*

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