SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42220 | AT | Annotation by Michelle Graham. TAIR10: Rhodanese/Cell cycle control phosphatase superfamily protein | chr2:17592105-17593305 FORWARD LENGTH=234 | SoyBase | E_val: 2.00E-112 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1530 | KOG | Rhodanese-related sulfurtransferase | JGI | ISS | |
| PF00581 | PFAM | Rhodanese-like domain | JGI | ISS | |
| UniRef100_A2Q4U4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rhodanese-like n=1 Tax=Medicago truncatula RepID=A2Q4U4_MEDTR | SoyBase | E_val: 2.00E-130 | ISS |
| UniRef100_I1N964 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N964_SOYBN | SoyBase | E_val: 4.00E-180 | ISS |
|
Glyma19g32770 not represented in the dataset |
Glyma19g32770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g29870 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g145800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g32770.2 sequence type=transcript gene model=Glyma19g32770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGCTGATCCCAAATTTCATGGCCCACTAAATTTAACAGGTGGCTTGAGATGAGTTCAGCTTTGAAAGCCTACTTCACTGGCACAGATATGAGTGACAAACTATCTCGTACAATGGCAGGAACTGGTTTCTCCACCTCCTGTCTTTCCTCTTCCAGCAACTTAGGGACATGTTGGTTGGTATTAAAAACTCACAATGCAAGGGCCGTGCCAGGGAAACTACCTGGAACTGTAAGGAGAAGATTGTCATTAATAAAAGCAGAAGTGAAGTATGTGAACGCTGAAAAGGCTAAGGAACTTGTGGAAGCTGATGGATATACTGTTCTTGATGTGCGGGACAAAACTCAGTTTGTGCGAGCTCACATAAAATCTTGTTCTCATGTGCCTCTTTTTGTTGAAAACAAAGACAATGATCCCGGTACTATTATAAAAAGGCAGCTGCACAATAATTTTTCTGGGTTGTTCTTTGGGTTACCATTCACTAAGCCAAATCCTGAGTTTGTGCAATCTGTTAAGAGCCAGTTTCCGCCTGAAAGTAAACTCTTGGTTGTATGTCAGGAAGGACTGAGGTCTGCTGCAGCAGCAAGTAAGTTAGAAGAAGCTGGTTTCGAAAATATAGCATGCATAACATCTGGCCTTCAAACTGGACTTTTGATTCTGTAGGGTCTACAGAGTTGGAGAATGCCGGCAAAGCTGGCTTGGTGACAATCCAAGGAAAAATCTCAACTGTGCTGGGAACTATTCTTGTTTGTGCATATATATTCGTTACCTTCTTCCCTGACCAAGCAGAGAAGCTATTCCAATTGGCCCCTACAGGCTAAGCCTAATAAATCCATTGTAGTCTTTCTTGATTTTGTTCTTCCTCACTCATTATGCATTTATGCATGTAGCATAATTAAGGAACGTGTGATTAGAATTGAGGGGAAAAAACATGAAATGTGAATAAAGTAATGTAAGAATTAGTAATGTGAGTATATGGCTATGATGCTCAAGAAACCAAATGGTTTATATCACTGGTAGTATTCTCCATTAAGCAAGAAGTATACCCATTTCCATTGTTTAAGATACCAGTTATTTCGAATTTACGTTCCTAGGGAAGTATGTTGCCTTGTACTGGATGGCATAACCCGCTAGATTGCCTTCATCTGTACTTACAAATGACTTTGTTGACACATTTGAATTTTGAATCCTCTAATGAGATTGTATTAAATGTATATTCACTCCGTTGTAATTATTGTGTAAGAAAAACTTTTTTGTCCCAATATATATATAATTGACATTTTAATTTTTCAA
>Glyma19g32770.1 sequence type=CDS gene model=Glyma19g32770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCAGCTTTGAAAGCCTACTTCACTGGCACAGATATGAGTGACAAACTATCTCGTACAATGGCAGGAACTGGTTTCTCCACCTCCTGTCTTTCCTCTTCCAGCAACTTAGGGACATGTTGGTTGGTATTAAAAACTCACAATGCAAGGGCCGTGCCAGGGAAACTACCTGGAACTGTAAGGAGAAGATTGTCATTAATAAAAGCAGAAGTGAAGTATGTGAACGCTGAAAAGGCTAAGGAACTTGTGGAAGCTGATGGATATACTGTTCTTGATGTGCGGGACAAAACTCAGTTTGTGCGAGCTCACATAAAATCTTGTTCTCATGTGCCTCTTTTTGTTGAAAACAAAGACAATGATCCCGGTACTATTATAAAAAGGCAGCTGCACAATAATTTTTCTGGGTTGTTCTTTGGGTTACCATTCACTAAGCCAAATCCTGAGTTTGTGCAATCTGTTAAGAGCCAGTTTCCGCCTGAAAGTAAACTCTTGGTTGTATGTCAGGAAGGACTGAGGTCTGCTGCAGCAGCAAGTAAGTTAGAAGAAGCTGGTTTCGAAAATATAGCATGCATAACATCTGGCCTTCAAACTGTAAAACCAGGGACTTTTGATTCTGTAGGGTCTACAGAGTTGGAGAATGCCGGCAAAGCTGGCTTGGTGACAATCCAAGGAAAAATCTCAACTGTGCTGGGAACTATTCTTGTTTGTGCATATATATTCGTTACCTTCTTCCCTGACCAAGCAGAGAAGCTATTCCAATTGGCCCCTACAGGCTAA >Glyma19g32770.2 sequence type=CDS gene model=Glyma19g32770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCAGCTTTGAAAGCCTACTTCACTGGCACAGATATGAGTGACAAACTATCTCGTACAATGGCAGGAACTGGTTTCTCCACCTCCTGTCTTTCCTCTTCCAGCAACTTAGGGACATGTTGGTTGGTATTAAAAACTCACAATGCAAGGGCCGTGCCAGGGAAACTACCTGGAACTGTAAGGAGAAGATTGTCATTAATAAAAGCAGAAGTGAAGTATGTGAACGCTGAAAAGGCTAAGGAACTTGTGGAAGCTGATGGATATACTGTTCTTGATGTGCGGGACAAAACTCAGTTTGTGCGAGCTCACATAAAATCTTGTTCTCATGTGCCTCTTTTTGTTGAAAACAAAGACAATGATCCCGGTACTATTATAAAAAGGCAGCTGCACAATAATTTTTCTGGGTTGTTCTTTGGGTTACCATTCACTAAGCCAAATCCTGAGTTTGTGCAATCTGTTAAGAGCCAGTTTCCGCCTGAAAGTAAACTCTTGGTTGTATGTCAGGAAGGACTGAGGTCTGCTGCAGCAGCAAGTAAGTTAGAAGAAGCTGGTTTCGAAAATATAGCATGCATAACATCTGGCCTTCAAACTGGACTTTTGATTCTGTAG
>Glyma19g32770.1 sequence type=predicted peptide gene model=Glyma19g32770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSALKAYFTGTDMSDKLSRTMAGTGFSTSCLSSSSNLGTCWLVLKTHNARAVPGKLPGTVRRRLSLIKAEVKYVNAEKAKELVEADGYTVLDVRDKTQFVRAHIKSCSHVPLFVENKDNDPGTIIKRQLHNNFSGLFFGLPFTKPNPEFVQSVKSQFPPESKLLVVCQEGLRSAAAASKLEEAGFENIACITSGLQTVKPGTFDSVGSTELENAGKAGLVTIQGKISTVLGTILVCAYIFVTFFPDQAEKLFQLAPTG* >Glyma19g32770.2 sequence type=predicted peptide gene model=Glyma19g32770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSALKAYFTGTDMSDKLSRTMAGTGFSTSCLSSSSNLGTCWLVLKTHNARAVPGKLPGTVRRRLSLIKAEVKYVNAEKAKELVEADGYTVLDVRDKTQFVRAHIKSCSHVPLFVENKDNDPGTIIKRQLHNNFSGLFFGLPFTKPNPEFVQSVKSQFPPESKLLVVCQEGLRSAAAASKLEEAGFENIACITSGLQTGLLIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
