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Report for Sequence Feature Glyma19g32760

Feature Type:gene_model
Chromosome:Gm19
Start:40474501
stop:40477076
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g32760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05310AT Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr1:1550615-1552434 REVERSE LENGTH=393 SoyBaseE_val: 0ISS
GO:0042545GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0030599GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity SoyBaseN/AISS
PTHR22931Panther PHOSPHOENOLPYRUVATE DIKINASE-RELATED JGI ISS
PTHR22931:SF5Panther METHYLESTERASE INHIBITOR-RELATED JGI ISS
PF01095PFAM Pectinesterase JGI ISS
UniRef100_I1N963UniRef Annotation by Michelle Graham. Best UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1N963_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1N963UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1N963_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g32760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g32760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g145700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g32760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g32760
>Glyma19g32760.1   sequence type=CDS   gene model=Glyma19g32760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCTCCAAAGCAACCTCTTATCTCTTTTGGTTGCCTTGGCCGCAGTTTTTGCATCTTTGAATCTGATAAATCCAATTCCACAGTTTCTCAATAACTTCACATATTTTAGTCTCACAACCTTGTCACCATCATCTGCATACTTGGCAAAACCTTTAACTTGGAACTTCTGGAGAGACCATCATCACAAGAAACACCCTGACAGTGGCAATACCGATTCTATTTGTGATGATTTTCCACCGGGAATTCCACCTCCAAATACCAATACCACTTCCTATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCGGCCGTGAATGCAGTTCCGGATTTTAGTGTCAAAAGAACCATAATATGGATAAACAGTGGCATGTACTATGAGAAGGTGTTGGTGCCTAAAACCAAACCCAACATTACATTTCAAGGACAAGGCTACACGTCAACTGCAATTGCATGGAATGATACCGCATTGTCCGCGAATGGAACATTTTATAGTGGCTCTGTACAAGTTTTCGGCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCGCCAATGCCCAGTCCTGGGGCCGTAGGGGCACAAGCAGTAGCTATTAGAGTATCGGGAGATCAATCTGAATTTAGCGGTTGTGGATTCTTCGGAGCCCAAGACACCCTTCATGATGATAAGGGTCGTCATTACTTCAAAGATTGCTACATCCAAGGCTCCATTGACTTTATATTCGGCAATGCAAGGTCACTCTACGAGAATTGTGAAATAGTGTCTATAGCGAACCCGGTACCTGCGGGACAAAAGAGCATAAATGGTGCAGTTACAGCTCATGGTAGAGTTTCAGGGGATGAAAACACAGGATTTGCATTTGTGAACAGTACAATAGGAGGAAACGGCAGGATATGGTTGGGTCGGGCATGGAGACCTTACTCTCGTGTTGTTTTTGCCTTCTCAATAATGTCAGATATCATTGCCCCTGAAGGTTGGAATGATTTCAACGACCCTTCAAGAGATCAGACTATCTTCTATGGAGAATACAATTGCTCGGGGCCTGGGGCTAATACGAACTTCAGGGCACCTTATGTACAGAAATTAAATGAAACACAAGCTTTGGCATTCCTCAACACAAGTTTTATTGATGGCGACCAATGGTTGGAAACTTCCAAATAA
Predicted protein sequences of Glyma19g32760
>Glyma19g32760.1   sequence type=predicted peptide   gene model=Glyma19g32760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLQSNLLSLLVALAAVFASLNLINPIPQFLNNFTYFSLTTLSPSSAYLAKPLTWNFWRDHHHKKHPDSGNTDSICDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRTIIWINSGMYYEKVLVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFYSGSVQVFGSNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFSGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCEIVSIANPVPAGQKSINGAVTAHGRVSGDENTGFAFVNSTIGGNGRIWLGRAWRPYSRVVFAFSIMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGPGANTNFRAPYVQKLNETQALAFLNTSFIDGDQWLETSK*






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