Glyma19g32740 - SoyBase

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Report for Sequence Feature Glyma19g32740

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40445673
stop:	40455210
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g32740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57890	AT	Annotation by Michelle Graham. TAIR10: Tubulin binding cofactor C domain-containing protein \| chr3:21438271-21441695 FORWARD LENGTH=573	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
KOG4416	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR16052	Panther	UNCHARACTERIZED	JGI		ISS
PF07986	PFAM	Tubulin binding cofactor C	JGI		ISS
UniRef100_A2Q4U5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TBCC domain-containing protein n=1 Tax=Medicago truncatula RepID=A2Q4U5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N959	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N959_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g32740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g32740

Paralog	Evidence	Comments
Glyma03g29850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g32740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g145500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g32740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g32740

Limit To All Plant Sequences

>Glyma19g32740.1   sequence type=CDS   gene model=Glyma19g32740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGAACCAACGGAGCCATGCACGTCATCCTCATTGGCGAGGGACCCAACCACCGTGATTCACCCGAGGCGCGAGCCCTTCGAGCACGGCCTCTTGCCAATCCCGCGCTTCATCTTCTCCGACCCGGCGCAAACCCTAATTCCGTTGAAGCAGAAGCTTCTCGAGTTATCCTCCAATCAGCGAGTCGACTCGGCGGCAATCTCCGAGTCACTGCAGATCTCCATTGAGCACGCCAGGCTCGTACTCGATACTCTCGCCTCGGTTCTGCACTCCGACGCCGAACCTCTCGTCGCCGCCAAGCTCGACGAAATCGATTCCGTCGGCGTCGATGTCCATGATCTGGTTTTGTTCCTCTACATTCAATCCTACAAGAGGCTCCTCCCGCGAACGCACAAGGACTCCGCCGCCGTCACCGACGTCTGGCCTTCCACCTCCGCCTTCGATGGCTACTTGTCTGCTCTCTCGCCGCTTCAGCTTGTGCGCAGTAACAGTCGGCGGGGTATGCCATCGCAGGTTGATGAAGAGGCGCATCAGTTGTCGTATCTGCAAAAACACCTGGCTAACATTGTGTCTCTTCTAGCACAGCCTGTGGAGGGAGAAGGCGAAGAATCGCTGGTTTTAACCATGGATAGATTTGAGCACCTTGGGTTTCTAATTCAGTTTGGTGATAAGGGATCTGAAGGAAATTCTTTTAGTCAATCTTCTCCCTTTTTTGCAAACTCAGACCCTGATATGCCTGCTGTTCCTGTTCCTGCTGCTCAAGTTCATGATTGGCTTCTACAGAATATAGCTTCTGCTTTGGATTATATTTCTGAACGAACTTCTTCTAAGGAGAATGGCCCAGCTAGTGCCTCTGATCAGGATGTTGCTATGGCTGATGCATGCACTGCCTCAGTTAACAAGGTCTCGACAAGTACTAGAAGTGCAAGTTTCATTGAAGGGATCTCCAAATCGTCATATGTGAAGCATGCATCTGACATTAAAGGTTCCTCTGTTAAGGTTCTAAATTGCCATGAGTCTGCTATATACATCTTAGCACCTTTGAGATATGCAACTGTCTATGGATGTTCAGATGCAACAATAGTTATAGGAGCAGTTGGCAAGGCTGTGAGAGTAGAACACTGCGAACGAGTTCATGTAATCGTAGCAGCAAAGCGTATTTGTATTGCTAATTGTCGTGAATGTGTTTTCTTTTTGGGAGTGAACCAGCAACCTCTTATTCTTGGTGATAATCATAAACTGCAGGTGGCTCCCTATAATACATTTTACTCCCAATTGGAAAAGCATATGAATGAAGTTGGAATTGTGCCCACAGTTAACCGATGGGATGAGCCTCTAGCATTGGGCATGGTTGATCCCCATGATTCATTATCTCATCCAGCAGGTGTCTCTGATGTTCAAGCTGAGTCTGCTACACGGGTGGACCCTGATCAGTTCACTGATTTTGTGATTCCAAACTGGTTTGGAGGAGAGTCCACTGGGGCTACAAAAGGCAACCCATTCACGTTACCAGATGCCTATATGGTATCTCAGCATAAAAATCAAAAAAATTTAGGGGAGATAAGGCACCTCTTGCGAGAAGCACCTTTAGAAGATAGTCGCAAACGAGAATTGTCATCTGCACTTCATGTCTACTTCAAGGACTGGTTATATGCTTCAGGAAACATTCGTCAGCTTTATTGTTTACAAGGCGATTGA

Predicted protein sequences of Glyma19g32740

Limit To All Plant Sequences

>Glyma19g32740.1   sequence type=predicted peptide   gene model=Glyma19g32740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEPTEPCTSSSLARDPTTVIHPRREPFEHGLLPIPRFIFSDPAQTLIPLKQKLLELSSNQRVDSAAISESLQISIEHARLVLDTLASVLHSDAEPLVAAKLDEIDSVGVDVHDLVLFLYIQSYKRLLPRTHKDSAAVTDVWPSTSAFDGYLSALSPLQLVRSNSRRGMPSQVDEEAHQLSYLQKHLANIVSLLAQPVEGEGEESLVLTMDRFEHLGFLIQFGDKGSEGNSFSQSSPFFANSDPDMPAVPVPAAQVHDWLLQNIASALDYISERTSSKENGPASASDQDVAMADACTASVNKVSTSTRSASFIEGISKSSYVKHASDIKGSSVKVLNCHESAIYILAPLRYATVYGCSDATIVIGAVGKAVRVEHCERVHVIVAAKRICIANCRECVFFLGVNQQPLILGDNHKLQVAPYNTFYSQLEKHMNEVGIVPTVNRWDEPLALGMVDPHDSLSHPAGVSDVQAESATRVDPDQFTDFVIPNWFGGESTGATKGNPFTLPDAYMVSQHKNQKNLGEIRHLLREAPLEDSRKRELSSALHVYFKDWLYASGNIRQLYCLQGD*

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