Report for Sequence Feature Glyma19g32740
Feature Type: gene_model
Chromosome: Gm19
Start: 40445673
stop: 40455210
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g32740
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G57890 AT
Annotation by Michelle Graham. TAIR10: Tubulin binding cofactor C domain-containing protein | chr3:21438271-21441695 FORWARD LENGTH=573
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
KOG4416
KOG
Uncharacterized conserved protein
JGI ISS
PTHR16052 Panther
UNCHARACTERIZED
JGI ISS
PF07986 PFAM
Tubulin binding cofactor C
JGI ISS
UniRef100_A2Q4U5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: TBCC domain-containing protein n=1 Tax=Medicago truncatula RepID=A2Q4U5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N959 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N959_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g32740
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g32740
Paralog Evidence Comments
Glyma03g29850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g32740 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g145500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g32740
Coding sequences of Glyma19g32740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g32740.1 sequence type=CDS gene model=Glyma19g32740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGGAACCAACGGAGCCATGCACGTCATCCTCATTGGCGAGGGACCCAACCACCGTGATTCACCCGAGGCGCGAGCCCTTCGAGCACGGCCTCTTGCCAATCCCGCGCTTCATCTTCTCCGACCCGGCGCAAACCCTAATTCCGTTGAAGCAGAAGCTTCTCGAGTTATCCTCCAATCAGCGAGTCGACTCGGCGGCAATCTCCGAGTCACTGCAGATCTCCATTGAGCACGCCAGGCTCGTACTCGATACTCTCGCCTCGGTTCTGCACTCCGACGCCGAACCTCTCGTCGCCGCCAAGCTCGACGAAATCGATTCCGTCGGCGTCGATGTCCATGATCTGGTTTTGTTCCTCTACATTCAATCCTACAAGAGGCTCCTCCCGCGAACGCACAAGGACTCCGCCGCCGTCACCGACGTCTGGCCTTCCACCTCCGCCTTCGATGGCTACTTGTCTGCTCTCTCGCCGCTTCAGCTTGTGCGCAGTAACAGTCGGCGGGGTATGCCATCGCAGGTTGATGAAGAGGCGCATCAGTTGTCGTATCTGCAAAAACACCTGGCTAACATTGTGTCTCTTCTAGCACAGCCTGTGGAGGGAGAAGGCGAAGAATCGCTGGTTTTAACCATGGATAGATTTGAGCACCTTGGGTTTCTAATTCAGTTTGGTGATAAGGGATCTGAAGGAAATTCTTTTAGTCAATCTTCTCCCTTTTTTGCAAACTCAGACCCTGATATGCCTGCTGTTCCTGTTCCTGCTGCTCAAGTTCATGATTGGCTTCTACAGAATATAGCTTCTGCTTTGGATTATATTTCTGAACGAACTTCTTCTAAGGAGAATGGCCCAGCTAGTGCCTCTGATCAGGATGTTGCTATGGCTGATGCATGCACTGCCTCAGTTAACAAGGTCTCGACAAGTACTAGAAGTGCAAGTTTCATTGAAGGGATCTCCAAATCGTCATATGTGAAGCATGCATCTGACATTAAAGGTTCCTCTGTTAAGGTTCTAAATTGCCATGAGTCTGCTATATACATCTTAGCACCTTTGAGATATGCAACTGTCTATGGATGTTCAGATGCAACAATAGTTATAGGAGCAGTTGGCAAGGCTGTGAGAGTAGAACACTGCGAACGAGTTCATGTAATCGTAGCAGCAAAGCGTATTTGTATTGCTAATTGTCGTGAATGTGTTTTCTTTTTGGGAGTGAACCAGCAACCTCTTATTCTTGGTGATAATCATAAACTGCAGGTGGCTCCCTATAATACATTTTACTCCCAATTGGAAAAGCATATGAATGAAGTTGGAATTGTGCCCACAGTTAACCGATGGGATGAGCCTCTAGCATTGGGCATGGTTGATCCCCATGATTCATTATCTCATCCAGCAGGTGTCTCTGATGTTCAAGCTGAGTCTGCTACACGGGTGGACCCTGATCAGTTCACTGATTTTGTGATTCCAAACTGGTTTGGAGGAGAGTCCACTGGGGCTACAAAAGGCAACCCATTCACGTTACCAGATGCCTATATGGTATCTCAGCATAAAAATCAAAAAAATTTAGGGGAGATAAGGCACCTCTTGCGAGAAGCACCTTTAGAAGATAGTCGCAAACGAGAATTGTCATCTGCACTTCATGTCTACTTCAAGGACTGGTTATATGCTTCAGGAAACATTCGTCAGCTTTATTGTTTACAAGGCGATTGA
Predicted protein sequences of Glyma19g32740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g32740.1 sequence type=predicted peptide gene model=Glyma19g32740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTEPTEPCTSSSLARDPTTVIHPRREPFEHGLLPIPRFIFSDPAQTLIPLKQKLLELSSNQRVDSAAISESLQISIEHARLVLDTLASVLHSDAEPLVAAKLDEIDSVGVDVHDLVLFLYIQSYKRLLPRTHKDSAAVTDVWPSTSAFDGYLSALSPLQLVRSNSRRGMPSQVDEEAHQLSYLQKHLANIVSLLAQPVEGEGEESLVLTMDRFEHLGFLIQFGDKGSEGNSFSQSSPFFANSDPDMPAVPVPAAQVHDWLLQNIASALDYISERTSSKENGPASASDQDVAMADACTASVNKVSTSTRSASFIEGISKSSYVKHASDIKGSSVKVLNCHESAIYILAPLRYATVYGCSDATIVIGAVGKAVRVEHCERVHVIVAAKRICIANCRECVFFLGVNQQPLILGDNHKLQVAPYNTFYSQLEKHMNEVGIVPTVNRWDEPLALGMVDPHDSLSHPAGVSDVQAESATRVDPDQFTDFVIPNWFGGESTGATKGNPFTLPDAYMVSQHKNQKNLGEIRHLLREAPLEDSRKRELSSALHVYFKDWLYASGNIRQLYCLQGD*