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Report for Sequence Feature Glyma19g32715

Feature Type:gene_model
Chromosome:Gm19
Start:40411120
stop:40418590
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g32715
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06839AT Annotation by Michelle Graham. TAIR10: bZIP transcription factor family protein | chr5:2120911-2126217 FORWARD LENGTH=460 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009410GO-bp Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005096GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activator activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI ISS
PTHR22952:SF54Panther BZIP FAMILY TRANSCRIPTION FACTOR JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_G7KUH8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Medicago truncatula RepID=G7KUH8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233EB94UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EB94 related cluster n=1 Tax=unknown RepID=UPI000233EB94 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g32715
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g32715 not represented in the dataset
Glyma19g32715 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g32715
ParalogEvidenceComments
Glyma03g29825 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g32715 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g145300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g32715
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g32715
>Glyma19g32715.1   sequence type=CDS   gene model=Glyma19g32715   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCAAAGACCACCAACCCAACAACAACTACTACACAATTGGAACCACTCCCACCACCTCAACAACGCCATCCTCCTCCTCCTCATCATCAGTTGCAACAACACCACCACCACCACCATCATCATCAACAAATTCATGACCATCATCAAATTTCTTTTGGAATGATGCAATCCTCTTCTTCATTTTCCTCTATCCCCGGAAACTACCTAAGCAAGGATTCCGGAGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCAGACCCTTCTAGTGTTCAAGACCAAAGACAAAACTCATCATCAGGAATGAGGCCTCCAACTCTCAACATTTTCCCCTCTAAGCCTATGCATGTAGAGCCATCATCATCCAAGGCCAAGGCTAACATAGAGCTAGTTTCTCCACAAACAAGTGGATCAAAGAGGCCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAACTGCTTCTGCCCCTCAGCCACCCAAACCTGTCAAGCGAGAGAGCAACCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAACTAGAGTCGAGTAGGATTAGGCTGAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGCGCACTTTTGGGTGGAGAGCAAGGCCTTCCTGTCACTATGAATACTATTAGCACGGAGGCTGCAATGTTTGACGTAGAATATGCTAGATGGCAAGAGGAGCACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAAAACGAGCTTAGACTGTTTGTGGACAATTGTTTGGCGCATTATGATCAAGTGATGAACCTCAAGAGCTTAGTGGCCAAAACAGATGTGTTCCATCTTGTTTCTGGCACGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGTTTCAGGCCATCTGAACTCATCAAGATTATTGTGCGTCAAATTGAGCCTCTCACGGAGCAACAAATATTGGGCATATGTGGATTGCAACAATCTACACAAGAAGCAGAAGAGGCTCTCTCCCAAGGGCTCGAGGCTCTTAATCAATCTCTCTCAGACACTATAACATCAGATTCTCTTAGTTATCCTCCCAATATGGCTAACTATATGGGACAGATGGCTGTAGCCATGAACAAGCTCTCCACTCTTGAAGGTTTCGTGAGACAGGCTGATAATCAGAGGCACCAAACCATTCACCGTCTGCACCAGATCCTAACAACGCGTCAAGCAGCAAGGTGTTTTCTGGCCATAGCTGAGTACTTCCATCGTCTTCGAGCCCTCAGTTCTTTGTGGCTGGCACGCCCTCGCCAAGAATAG
Predicted protein sequences of Glyma19g32715
>Glyma19g32715.1   sequence type=predicted peptide   gene model=Glyma19g32715   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSKTTNPTTTTTQLEPLPPPQQRHPPPPHHQLQQHHHHHHHHQQIHDHHQISFGMMQSSSSFSSIPGNYLSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKAKANIELVSPQTSGSKRPSEPSMELANPRNETASAPQPPKPVKRESNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARTQGMFLGGGALLGGEQGLPVTMNTISTEAAMFDVEYARWQEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGTWKTPAERCFMWIGGFRPSELIKIIVRQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADNQRHQTIHRLHQILTTRQAARCFLAIAEYFHRLRALSSLWLARPRQE*






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