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Report for Sequence Feature Glyma19g32610

Feature Type:gene_model
Chromosome:Gm19
Start:40361923
stop:40363229
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g32610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42260AT Annotation by Michelle Graham. TAIR10: uv-b-insensitive 4 | chr2:17602240-17603283 REVERSE LENGTH=259 SoyBaseE_val: 4.00E-38ISS
GO:0010091GO-bp Annotation by Michelle Graham. GO Biological Process: trichome branching SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_D7LI35UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polychome, UV-B-insensitive 4 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LI35_ARALL SoyBaseE_val: 4.00E-28ISS
UniRef100_I1N949UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N949_SOYBN SoyBaseE_val: 4.00E-150ISS

Expression Patterns of Glyma19g32610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g32610
ParalogEvidenceComments
Glyma03g29760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g32610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g144400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g32610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g32610
>Glyma19g32610.1   sequence type=CDS   gene model=Glyma19g32610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCCAATCACGTCACCGTCGCGTAACCGTCGTCGACCTCGCCGCCTCCTTAGCCCGCCGCCGCGTCTCATTTATCTTCAACGAAGCTCCGACTCTCCGTACCCCTCCAAGAACCGCCGCCTTCGGTCGCGGAAGAGCTCGCGCTTCTCCCCGCTCCCAGAACATACCGCCATCAACTGCGCGACGTGGTAGAGGACGCGTTCCGTTACGCTCCGTGCTTCCGGCGTGGTTCCCTAGGACACCACTCCGTGACATTACTGCTGTCGTTCAGGCGATCGAGAGGAGAAGTGCGAGGCTAGGAGAAGTCGAAGGCCAGCGAATCGGAAACACTGATCCTGCTTCAGATCGTTTAGTTTCGGAACCTTCCGAACCTGCTTCTGCTTCTGCCTCTGCCTCTGCGGTGAAATCGCCGAAATCAGTTGGAGTGAAACTCCGAACGCCGTTCGGGAGCAAGGTCCCGAAGATCTTCCTCGACATATCCGAGTTACCGGAACACGACGAATCGGAGGCTCTGACGCCGCAGAAGAAGCTTCTCGACAACATCGATCAGGTTGAGGAAGCGGTGCGCGAAGAACTGAACAAGCTGAAGAGAACTCCGAGCGCGAAGAAAACAGAGAGGGAAAAGCGGGTTCGCACATTGATGTCCATGAGGTAA
Predicted protein sequences of Glyma19g32610
>Glyma19g32610.1   sequence type=predicted peptide   gene model=Glyma19g32610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQSRHRRVTVVDLAASLARRRVSFIFNEAPTLRTPPRTAAFGRGRARASPRSQNIPPSTARRGRGRVPLRSVLPAWFPRTPLRDITAVVQAIERRSARLGEVEGQRIGNTDPASDRLVSEPSEPASASASASAVKSPKSVGVKLRTPFGSKVPKIFLDISELPEHDESEALTPQKKLLDNIDQVEEAVREELNKLKRTPSAKKTEREKRVRTLMSMR*






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