Glyma19g32580 - SoyBase

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Report for Sequence Feature Glyma19g32580

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40332905
stop:	40336988
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g32580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12180	AT	Annotation by Michelle Graham. TAIR10: Cornichon family protein \| chr3:3883464-3884570 FORWARD LENGTH=146	SoyBase	E_val: 3.00E-45	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2729	KOG	ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation	JGI		ISS
PTHR12290	Panther	CORNICHON	JGI		ISS
PTHR12290:SF5	Panther	CORNICHON-RELATED	JGI		ISS
PF03311	PFAM	Cornichon protein	JGI		ISS
UniRef100_A2Q3F1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cornichon n=1 Tax=Medicago truncatula RepID=A2Q3F1_MEDTR	SoyBase	E_val: 3.00E-71	ISS
UniRef100_C6T3T1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T3T1_SOYBN	SoyBase	E_val: 6.00E-93	ISS

Expression Patterns of Glyma19g32580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g32580

Paralog	Evidence	Comments
Glyma03g29730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g32580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g144000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g32580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g32580

Limit To All Plant Sequences

>Glyma19g32580.3   sequence type=transcript   gene model=Glyma19g32580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACCAAACAGGGATTGTACAGCTGTCGTGTCGAGGCTTCACCACCTTGTCCGTGTGCAGTGTTCCAACAAGGCAACAACTCAAACATTGTCAACTGTTTCAGTTTGTTGAGGTTTTGATGTTGTCTGACTTGGAAGCTGACTTTATCAACCCCTATGATGCTGCATCTCGGATTAACTACTTTATCGTTCCTGAGTTTATTGGGCAGGGATTGTTGTGCGCTTTCTGCCTTTTAACTGGTCATTGGATCATGTTTTTGATTACGGTTCCTGTTACATGCTATCATGTGATGCTGTACATGAAACGGAAGCATCTCATTGATGTTACTGAAGTGTTTAGGTTACTTAATGCTGAGAAGAAATTTCGGATAGCCAAAATTGCTTATTACTTAACAATCATCTTTATATCTATCTTCAGGCTTGTATTGATGCTTGTCTACTATTTAGATTCTGAAGATGAATGAAGTGGACAAAACTTTCAATACCCACTACTTATGGTGTAAGGTGGTGCGTCTTTTTCATTTTCTCTTTTTTTGAGGGTGTGATTGAGTTCTATAGCATAACATTTAGAACTAAAAAATCACAGCTGTAGCCTCTAGGAGGAAACAAAAATCTGTCACTAATTTGAATGAATATTGCCAACTCAGGTATACCATTGTTTGACTCCGGTTAAGCATGATCCCTAGAAATAGCTTGCCAACTGAATTTTTATGGTAACTAATTATCATAGAATTGAAAGATTATATTTGGCAATGGCAACGGGTGATTTGAAGATTGCATATTATTTGGGTGTCATAAGAATGCTACAACTTGTTATAAAGTAGCAACACCTTGTGTAAATTTAGCATGAACTATTGTAATTGTAATACTATTACGAGGCTTTCAAGTCCACCGTGCTCGTTTTTATTTTTTGCGTGAAAGACTAATTTTTCTTCCATTTCTGTGGAAAATGCATCTTAGTTATTTTAATTACAAGGAGGTCTAGAATTAGTGTGAGG

Coding sequences of Glyma19g32580

Limit To All Plant Sequences

>Glyma19g32580.2   sequence type=CDS   gene model=Glyma19g32580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGGATTTGTTCTTTTGGTTTGTGCTTTGTTTGCCTCTCAACTTTGCTTTTTTAGCCTCAACGTTCTACCAGGTTTTGATGTTGTCTGACTTGGAAGCTGACTTTATCAACCCCTATGATGCTGCATCTCGGATTAACTACTTTATCGTTCCTGAGTTTATTGGGCAGGGATTGTTGTGCGCTTTCTGCCTTTTAACTGGTCATTGGATCATGTTTTTGATTACGGTTCCTGTTACATGCTATCATGTGATGCTGTACATGAAACGGAAGCATCTCATTGATGTTACTGAAGTGTTTAGGTTACTTAATGCTGAGAAGAAATTTCGGATAGCCAAAATTGCTTATTACTTAACAATCATCTTTATATCTATCTTCAGGCTTGTATTGATGCTTGTCTACTATTTAGATTCTGAAGATGAATGA

>Glyma19g32580.3   sequence type=CDS   gene model=Glyma19g32580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTCTGACTTGGAAGCTGACTTTATCAACCCCTATGATGCTGCATCTCGGATTAACTACTTTATCGTTCCTGAGTTTATTGGGCAGGGATTGTTGTGCGCTTTCTGCCTTTTAACTGGTCATTGGATCATGTTTTTGATTACGGTTCCTGTTACATGCTATCATGTGATGCTGTACATGAAACGGAAGCATCTCATTGATGTTACTGAAGTGTTTAGGTTACTTAATGCTGAGAAGAAATTTCGGATAGCCAAAATTGCTTATTACTTAACAATCATCTTTATATCTATCTTCAGGCTTGTATTGATGCTTGTCTACTATTTAGATTCTGAAGATGAATGA

Predicted protein sequences of Glyma19g32580

Limit To All Plant Sequences

>Glyma19g32580.2   sequence type=predicted peptide   gene model=Glyma19g32580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLDLFFWFVLCLPLNFAFLASTFYQVLMLSDLEADFINPYDAASRINYFIVPEFIGQGLLCAFCLLTGHWIMFLITVPVTCYHVMLYMKRKHLIDVTEVFRLLNAEKKFRIAKIAYYLTIIFISIFRLVLMLVYYLDSEDE*

>Glyma19g32580.3   sequence type=predicted peptide   gene model=Glyma19g32580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSDLEADFINPYDAASRINYFIVPEFIGQGLLCAFCLLTGHWIMFLITVPVTCYHVMLYMKRKHLIDVTEVFRLLNAEKKFRIAKIAYYLTIIFISIFRLVLMLVYYLDSEDE*

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