Report for Sequence Feature Glyma19g32500
Feature Type: gene_model
Chromosome: Gm19
Start: 40232041
stop: 40234694
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g32500
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G51200 AT
Annotation by Michelle Graham. TAIR10: A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173
SoyBase E_val: 3.00E-50 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG3173
KOG
Predicted Zn-finger protein
JGI ISS
PTHR10634 Panther
PRK1-ASSOCIATED ZINC FINGER PROTEIN
JGI ISS
PF01428 PFAM
AN1-like Zinc finger
JGI ISS
PF01754 PFAM
A20-like zinc finger
JGI ISS
UniRef100_C6SZ65 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ65_SOYBN
SoyBase E_val: 4.00E-110 ISS
UniRef100_G7KUE5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger A20 and AN1 domain-containing stress-associated protein n=1 Tax=Medicago truncatula RepID=G7KUE5_MEDTR
SoyBase E_val: 6.00E-95 ISS
Expression Patterns of Glyma19g32500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g32500
Paralog Evidence Comments
Glyma03g29662 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g32500 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g143200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g32500
Transcripts of Glyma19g32500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g32500.6 sequence type=transcript gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAGAAATCGAGAGAAAGTGAGAGAGAATTACAGAGCATTTTCCAACACGATTACACGACCGAATCAAACCCCTCTTTCTCTCCGAAGCTGCTTTTAATATCGTACTGGCCTTCGATTGTTCTCCTCTTTAATACATACTGTTCTCTCTTCGATTTGAGAATCTTTTTTTTTTCTTATACAGGGAACAGTACAAGAGTCTGAGCATCGGTTAACCCAACTGCACAGGTAGTCTCCAAATAATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAGGCATGCACTACTGAAGGTTAATGTATGAACCTTGAAGCTTCATCTTCTATATGTAAGTTTCATATATGTTGTCTTCCTGGTTTTTTAGGTGTCCTTTAGTGATTAAAATGATCCAAGTCAAGATGGCAAGGGCATCATTAGGGAAAACATTTATTGTTGGTTGGGAGATCCACTTGTTAGCTCCAGTGTGTTTGTGCTGCTTTGATGGACACTTTGGCTCATTTTGTAATTTGATTTCCTGCTTGGTCTGCATTTTTCTTCCTCATTGCATGAAAAGTATTTCCTGCGTAGTCTTGTATTGGTTTTGCTTTTGAATCATTATAGGAATGTTTAATTTTTAATGCTCATTGCTCAAAATACACGCAGCAAGTTCGGATCTACTGGCAGGACTTCGTTATTGATATAATTCTCAATTTATTATTGTTATTGGCCTATACGAATGAGAGAAACAATTTTCTGGAACAAAAAGATTG
>Glyma19g32500.7 sequence type=transcript gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAGAAATCGAGAGAAAGTGAGAGAGAATTACAGAGCATTTTCCAACACGATTACACGACCGAATCAAACCCCTCTTTCTCTCCGAAGCTGCTTTTAATATCGTACTGGCCTTCGATTGTTCTCCTCTTTAATACATACTGTTCTCTCTTCGATTTGAGGGAACAGTACAAGAGTCTGAGCATCGGTTAACCCAACTGCACAGGTAGTCTCCAAATAATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAGGCATGCACTACTGAAGGTTAATGTATGAACCTTGAAGCTTCATCTTCTATATGTAAGTTTCATATATGTTGTCTTCCTGGTTTTTTAGGTGTCCTTTAGTGATTAAAATGATCCAAGTCAAGATGGCAAGGGCATCATTAGGGAAAACATTTATTGTTGGTTGGGAGATCCACTTGTTAGCTCCAGTGTGTTTGTGCTGCTTTGATGGACACTTTGGCTCATTTTGTAATTTGATTTCCTGCTTGGTCTGCATTTTTCTTCCTCATTGCATGAAAAGTATTTCCTGCGTAGTCTTGTATTGGTTTTGCTTTTGAATCATTATAGGAATGTTTAATTTTTAATGCTCATTGCTCAAAATACACGCAGCAAGTTCGGATCTACTGGCAGGACTTCGTTATTGATATAATTCTCAATTTATTATTGTTATTGGCCTATACGAATGAGAGAAACAATTTTCTGGAACAAAAAGATTG
>Glyma19g32500.8 sequence type=transcript gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAGAAATCGAGAGAAAGTGAGAGAGAATTACAGAGCATTTTCCAACACGATTACACGACCGAATCAAACCCCTCTTTCTCTCCGAAGCTGCTTTTAATATCGTACTGGCCTTCGATTGTTCTCCTCTTTAATACATACTGTTCTCTCTTCGATTTGAGAATCTTTTTTTTTTCTTATACAGGGAACAGTACAAGAGTCTGAGCATCGGTTAACCCAACTGCACAGTCTCCAAATAATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAGGCATGCACTACTGAAGGTTAATGTATGAACCTTGAAGCTTCATCTTCTATATGTAAGTTTCATATATGTTGTCTTCCTGGTTTTTTAGGTGTCCTTTAGTGATTAAAATGATCCAAGTCAAGATGGCAAGGGCATCATTAGGGAAAACATTTATTGTTGGTTGGGAGATCCACTTGTTAGCTCCAGTGTGTTTGTGCTGCTTTGATGGACACTTTGGCTCATTTTGTAATTTGATTTCCTGCTTGGTCTGCATTTTTCTTCCTCATTGCATGAAAAGTATTTCCTGCGTAGTCTTGTATTGGTTTTGCTTTTGAATCATTATAGGAATGTTTAATTTTTAATGCTCATTGCTCAAAATACACGCAGCAAGTTCGGATCTACTGGCAGGACTTCGTTATTGATATAATTCTCAATTTATTATTGTTATTGGCCTATACGAATGAGAGAAACAATTTTCTGGAACAAAAAGATTG
>Glyma19g32500.9 sequence type=transcript gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAGGTGTGATTTTTCTTGGTTCCCTTGTCCGGTTTGAGACTTGTGTTAATTGTTCATTTGGTCGATCTTTGTTGCTAGACATTGGAAGTGTTAACTGTTCTGTGGAAGTTTGTTTGTGTTGGTAATGGGTTTGTTGGGTTTTGTTTGCATGCTTGAATTATTTGTGAACTTTGATTGTGTGTTGATGCATTTGTTGGAATTTAGTGTCTGTTTTTGTTCAACGTCCGTAGAGAGGATTCTTGGTGAGTTTGTGTTCTTCTTTTCCTTGTTTCTTATATGGTGGATTGGTGGAATGTATTGGAAGGTTAGTGCATGAGAGAGAAGGAATGCTGTCAGTTCTGTTTTTAATCCTTTTACATGTCAATCCATGTGTCGTGATGTCTAATTGGCTTGATCAAGGTTTTAAACTGCCGTCATGGTATCATCGTGGTGTTGCGGGAAATTGTGGACAAATGTGCCCGTTGTGGCTGTAAATTGTGGTTGTGGAGACTTCAAAAACCTTGATGTTGCTGGCCAAAATTAAGGTAGTCTCCAAATAATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAGGCATGCACTACTGAAGGTTAATGTATGAACCTTGAAGCTTCATCTTCTATATGTAAGTTTCATATATGTTGTCTTCCTGGTTTTTTAGGTGTCCTTTAGTGATTAAAATGATCCAAGTCAAGATGGCAAGGGCATCATTAGGGAAAACATTTATTGTTGGTTGGGAGATCCACTTGTTAGCTCCAGTGTGTTTGTGCTGCTTTGATGGACACTTTGGCTCATTTTGTAATTTGATTTCCTGCTTGGTCTGCATTTTTCTTCCTCATTGCATGAAAAGTATTTCCTGCGTAGTCTTGTATTGGTTTTGCTTTTGAATCATTATAGGAATGTTTAATTTTTAATGCTCATTGCTCAAAATACACGCAGCAAGTTCGGATCTACTGGCAGGACTTCGTTATTGATATAATTCTCAATTTATTATTGTTATTGGCCTATACGAATGAGAGAAACAATTTTCTGGAACAAAAAGATTG
Coding sequences of Glyma19g32500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g32500.3 sequence type=CDS gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAG
>Glyma19g32500.6 sequence type=CDS gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAG
>Glyma19g32500.7 sequence type=CDS gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAG
>Glyma19g32500.8 sequence type=CDS gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAG
>Glyma19g32500.9 sequence type=CDS gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAG
Predicted protein sequences of Glyma19g32500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g32500.3 sequence type=predicted peptide gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKFAASSVENIVNGSSNGNGKQAVATGAVAVQVEAVEVKIVCAQSSVDSSSGDSLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYRTVGQDAIAKANPIIKADKLDKI*
>Glyma19g32500.6 sequence type=predicted peptide gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKFAASSVENIVNGSSNGNGKQAVATGAVAVQVEAVEVKIVCAQSSVDSSSGDSLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYRTVGQDAIAKANPIIKADKLDKI*
>Glyma19g32500.7 sequence type=predicted peptide gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKFAASSVENIVNGSSNGNGKQAVATGAVAVQVEAVEVKIVCAQSSVDSSSGDSLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYRTVGQDAIAKANPIIKADKLDKI*
>Glyma19g32500.8 sequence type=predicted peptide gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKFAASSVENIVNGSSNGNGKQAVATGAVAVQVEAVEVKIVCAQSSVDSSSGDSLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYRTVGQDAIAKANPIIKADKLDKI*
>Glyma19g32500.9 sequence type=predicted peptide gene model=Glyma19g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKFAASSVENIVNGSSNGNGKQAVATGAVAVQVEAVEVKIVCAQSSVDSSSGDSLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYRTVGQDAIAKANPIIKADKLDKI*