Glyma19g32480 - SoyBase

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Report for Sequence Feature Glyma19g32480

Feature Type:	gene_model
Chromosome:	Gm19
Start:	40215520
stop:	40218586
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g32480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12170	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr3:3881021-3882655 FORWARD LENGTH=262	SoyBase	E_val: 6.00E-130	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0719	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24078	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER	JGI		ISS
PTHR24078:SF31	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER 5	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_A2Q3D3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=A2Q3D3_MEDTR	SoyBase	E_val: 1.00E-160	ISS
UniRef100_I1N938	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N938_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g32480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g32480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g143100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g32480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g32480

Limit To All Plant Sequences

>Glyma19g32480.2   sequence type=transcript   gene model=Glyma19g32480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTTATTTCTTGATAATCCCAAATAGGCTTTCCAGAATATAATTGGGTGTACCCATACTTTGTAGGTAGAGGGTGAATCAGAACACAAAGGCGGGAAAAAATAGTAAAGCCGGAATCACATGGCGGGAACAACCCCAACTTTATTTTATTTTTAAAAAAAAGTTAATATTAGTTTAATTTAACTTCAAACGCAAACGTTGATTTAAAACAAGCACGAGGCGCAAACGAACCCACCAAACGAGTATTGGAATCACTCTCTTTCTGCAAAACGAAAATGGCGCAGAAGAAGAAAGCTAGGGTTTCCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGGTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTTAGAACAATGTACAAGAAGGTGACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATCGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAGGAGAACTAAAGGCAAAAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCTGAAATCAAACCGCCCACAAATCCTTTGAGGAGGAGGGAAAATCAGAGACAGATCTATGTGCAATCATAGCACAACGCCGAAATGAGAGAAAAGGGCAGTTTGATTTAATGTTCTCATCTCTAGTTTCAAAATATGGTGGTGGTGATACGCCAGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGAGAAAGCTGGAGACTGGTAGATCCTCTAAAAACTCGAAGCAATCAAAGCGAAAGTAAAAATATACAATTATGTGTCTAGTTAATTTGTTTCTGTGACATGGTGTTTGCTCCTGTTTTTTAGTTATCAAATGTTGATGTATTTAGCAGAACTACTTGGGTGTTTTCAATTTGTAAGTCGATGTGACTGGTTATTACTGAGATGGAGCCATTTTATTTCTTTGCTGTGACGGCAAGTGATTGGTATCCTTTTACCAAATTTTTTTATATGGATGTTTGTTGTTTATTTAGCACCAATGCTGATATGCTTACAGTTAAGTTTCCGCTGGCTTTAAATGAG

Coding sequences of Glyma19g32480

Limit To All Plant Sequences

>Glyma19g32480.1   sequence type=CDS   gene model=Glyma19g32480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAGAAGAAGAAAGCTAGGGTTTCCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGGTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTTAGAACAATGTACAAGAAGGTGACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATCGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAGGAGAACTAAAGGCAAAAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCTGAAATCAAACCGCCCACAAATCCTTTGAGGAGGAGGGAAAAGTCAAATAAGCAGTCAGAGACAGATCTATGTGCAATCATAGCACAACGCCGAAATGAGAGAAAAGGGCAGTTTGATTTAATGTTCTCATCTCTAGTTTCAAAATATGGTGGTGGTGATACGCCAGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGAGAAAGCTGGAGACTGGTAGATCCTCTAAAAACTCGAAGCAATCAAAGCGAAAGTAA

>Glyma19g32480.2   sequence type=CDS   gene model=Glyma19g32480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAGAAGAAGAAAGCTAGGGTTTCCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGGTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTTAGAACAATGTACAAGAAGGTGACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATCGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAGGAGAACTAAAGGCAAAAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCTGAAATCAAACCGCCCACAAATCCTTTGAGGAGGAGGGAAAATCAGAGACAGATCTATGTGCAATCATAG

Predicted protein sequences of Glyma19g32480

Limit To All Plant Sequences

>Glyma19g32480.1   sequence type=predicted peptide   gene model=Glyma19g32480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQKKKARVSDDEEMEVQHDQTSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLQEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAIASGELKAKKAYQKWAKEVSEIKPPTNPLRRREKSNKQSETDLCAIIAQRRNERKGQFDLMFSSLVSKYGGGDTPEPSEEEFEATRRKLETGRSSKNSKQSKRK*

>Glyma19g32480.2   sequence type=predicted peptide   gene model=Glyma19g32480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQKKKARVSDDEEMEVQHDQTSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLQEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAIASGELKAKKAYQKWAKEVSEIKPPTNPLRRRENQRQIYVQS*

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