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Report for Sequence Feature Glyma19g32410

Feature Type:gene_model
Chromosome:Gm19
Start:40145340
stop:40148575
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g32410
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57610AT Annotation by Michelle Graham. TAIR10: adenylosuccinate synthase | chr3:21334519-21336603 REVERSE LENGTH=490 SoyBaseE_val: 0ISS
GO:0006164GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process SoyBaseN/AISS
GO:0006167GO-bp Annotation by Michelle Graham. GO Biological Process: AMP biosynthetic process SoyBaseN/AISS
GO:0009152GO-bp Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0004019GO-mf Annotation by Michelle Graham. GO Molecular Function: adenylosuccinate synthase activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG1355 KOG Adenylosuccinate synthase JGI ISS
PTHR11846Panther ADENYLOSUCCINATE SYNTHETASE JGI ISS
PF00709PFAM Adenylosuccinate synthetase JGI ISS
UniRef100_I1N933UniRef Annotation by Michelle Graham. Most informative UniRef hit: Adenylosuccinate synthetase 2 n=1 Tax=Glycine max RepID=I1N933_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1N933UniRef Annotation by Michelle Graham. Best UniRef hit: Adenylosuccinate synthetase 2 n=1 Tax=Glycine max RepID=I1N933_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g32410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g32410
ParalogEvidenceComments
Glyma03g29560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g32410 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g142400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g32410
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g32410
>Glyma19g32410.1   sequence type=CDS   gene model=Glyma19g32410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAGCATCTCATCACTGACCCTTGATTCTCACGCAATATGCAACACTCAGCGCCCCATCTCCCTCCGCCAAGTTCGCCCCACTCGAAACGTCGTCGTATGCTCCGCGAAGCCCGTCGCGCCTCCCCCCACCAAGCTCGCTGCTGCCGACACCTCCGGCAGCCGCATCGGGGCGCTGAGCCAGGTCTCCGGCGTGCTAGGTTGCCAGTGGGGCGACGAGGGCAAAGGGAAACTCGTCGACATATTGGCCCAGCACTTCGAAATCGTTGCTCGCTGCCAGGGTGGAGCTAATGCTGGGCATACTATCTATAATGCAGAAGGGAAAAAGTTTGCCCTACATCTTGTTCCTTCTGGTATTCTCAATGAGGATACTCTCTGTGTTATTGGGAATGGGGTTGTAGTGCACCTGCCGGGGTTGTTTAAAGAGATTGACGGTCTTGAATCAAATGGGGTCTCTTGCAAGGGAAGGATATTGATATCTGATCGCGCTCACCTGTTGTTTGATTTTCATCAAGTAGTGGATGGGCTAAGAGAAGCCGAGCTTGCTAAATCTTTCATTGGCACCACCAAGAGAGGCATTGGACCCTGCTACTCCAGCAAGGTTAACCGTAATGGCATCCGAGTGGGTGATTTGAGGCACATGGATACTTTCCCTCAGAAGCTTGATCTTATATTGTCAGATGCAGCATTGAGGTTCAAAGATTTTAACTATGGTCCAGATGTGCTCAGGGAAGAAGTTGAAAAATACAAGAGGTATGCCGAGAGGTTGGAGCCCTTTATTGCTGATACTGTGCTTGTCATGAATGATGCCATAGAACAAAAGAAGAAGATTTTGGTTGAAGGAGGACAAGCTACCATGTTGGACATTGATTTCGGAACTTATCCCTTTGTTACTTCTTCTAGCCCATCAGCAGGCGGGATATGCACTGGTCTTGGTATTGCTCCAAGGGTAGTTGGTGATTTAATAGGAGTGGTGAAGGCGTACACAACAAGAGTTGGTTCTGGTCCTTTTCCAACTGAAATTTTGGGTTCAGGAGGTGATCTCCTCAGATTTGCTGGGCAGGAGTTTGGCACAACTACTGGCCGTCCTCGACGGTGTGGCTGGCTCGATATAGTTGCTCTGAAATACTCATGTCAGATCAATGGTTTCTCATCGTTGAATCTTACCAAGCTGGATGTTTTATCAGATCTTGAAGAAATACAGTTGGGTGTCTCTTACAAACTTGCTGATGGCACCCCAATCAAATCATTCCCTTCAGATCTCCGTCTTCTTGAGCAACTGAAGGTGGAATATGAAGTACTTCCTGGATGGAAATATGATATTTCTTCCATAAGAAACTATTCTGACCTTCCAAAAGCTGCTAGGCTGTATGTGGAAAGGATAGAAGAACTTGTGGGGGTCCCTATTCACTACATTGGTATTGGGCCAGGACGTGATGCTCTCATATACAAATGA
Predicted protein sequences of Glyma19g32410
>Glyma19g32410.1   sequence type=predicted peptide   gene model=Glyma19g32410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSISSLTLDSHAICNTQRPISLRQVRPTRNVVVCSAKPVAPPPTKLAAADTSGSRIGALSQVSGVLGCQWGDEGKGKLVDILAQHFEIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILISDRAHLLFDFHQVVDGLREAELAKSFIGTTKRGIGPCYSSKVNRNGIRVGDLRHMDTFPQKLDLILSDAALRFKDFNYGPDVLREEVEKYKRYAERLEPFIADTVLVMNDAIEQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGSGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKYSCQINGFSSLNLTKLDVLSDLEEIQLGVSYKLADGTPIKSFPSDLRLLEQLKVEYEVLPGWKYDISSIRNYSDLPKAARLYVERIEELVGVPIHYIGIGPGRDALIYK*






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