SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57550 | AT | Annotation by Michelle Graham. TAIR10: guanylate kinase | chr3:21307269-21309193 FORWARD LENGTH=389 | SoyBase | E_val: 1.00E-175 | ISS |
| GO:0006163 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0009117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004385 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guanylate kinase activity | SoyBase | N/A | ISS |
| KOG0707 | KOG | Guanylate kinase | JGI | ISS | |
| PTHR23117 | Panther | GUANYLATE KINASE | JGI | ISS | |
| PTHR23117:SF1 | Panther | GUANYLATE KINASE | JGI | ISS | |
| PF00625 | PFAM | Guanylate kinase | JGI | ISS | |
| UniRef100_A2Q3K9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Guanylate kinase n=1 Tax=Medicago truncatula RepID=A2Q3K9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EA27 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EA27 related cluster n=1 Tax=unknown RepID=UPI000233EA27 | SoyBase | E_val: 0 | ISS |
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Glyma19g32290 not represented in the dataset |
Glyma19g32290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g29470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g141200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g32290.2 sequence type=transcript gene model=Glyma19g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAGCACCGCAGAAGAAAACGAAAAACAGGTCCTGCTTGCTTGGCTCATAATCGAAAGCCACCCCTTTATGCTTTTCCGCCTACAAATATGACAACCTTCCTTACATTTTCTTCCAACTTTATCTTCCTCTTCTCTCATTTTTCATCTCACCCTTCCTCTATTTCCATCATTTCGTGACAACAACAACATAACCCTCTCGCCCCCAACACACACCTCTTCTTTTTAAGGGTTTATCTTAAACCAGGATTTTTGGCACTAATTTCTCTATGGTAAGCATCCCTTTTCCCTGCTAATGGTTACAAAATGCAAATTGATTATGATGTTCAAATGTGGATCAAAGTGGTTTTGCTTTAATGTGTCTAATTTCTCTTCGGATGTGATCACTAGGGAGAAGCACCAGCATTGCTTGTTGATGACGTGCAGGATGGGGCTCTGAATGGCCTTGAATTGAAAAATGGAACTTGCAAAACAACTGCTACTGTTGGCGATAAGATGGGTTCGTCCCACTGTGCGTGGCACCAAACCCGTGTTGTGCAATGGCCTCTCAGCAGTGCCTTTGGAAGACCGAATACTGATTCTTAAGAAGGGTTCTAAGCCTGATGATCGGATATGGTTCCTGGAGATTGACACCCAATATGTTAGGCAGCAGCAAAAAATTTTGGGGACTGAGGTAGTTGCATGGAGTAAAGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTAGGCAAAGGAACACTGATATCAATGCTTATGAAGGAATTTCCATCTATGTTTGGTTTTTCCGTGAGCCACACCACCCGTGCTCCAAGAGGTATCGAGAAAGATGGGGTTCATTACCATTTTACTGAGAAGAGTATAATGGAGAAAGAGATCAAAGAAGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGCAATCTGTATGGAACTAGTGTTGAGGCTGTCGAACTGGTAGCAGATGCAGGGAAAAGATGTATTCTTGATATTGACGTTCAAGGTGCAAGATCTGTGAGGGCTAGTACGCTTGAAGCTATATTCATCTTTATCTGCCCCCCATCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGGGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTACGAAATGCTGATGCTGAGATTGAGCAAGGGAAATCTTCTCAAATATTTGATTTCATCCTATACAATGACAATCTTGAGGAGTGTCATGAGAGACTTAAGAAACTATTGGGACTTGACGATTTTATTGATTTACCAATGGATCATTCAGTGTCAAAAATTGATAACAAAATCATCATAAACTGCATCTCCTCAGGAGAGAAGGAATCAAAGAATTTGGTCATTTTGGATGTTTCCTCACTAAAAGGGGGTGCACCTGGACGGACAAGAGGCCTAAATTTCCAAGCCATTGGCTCTTTCTCAAATGGCTTGAATGGGATAGATCAACTTAGCTAA
>Glyma19g32290.1 sequence type=CDS gene model=Glyma19g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAAGCACCAGCATTGCTTGTTGATGACGTGCAGGATGGGGCTCTGAATGGCCTTGAATTGAAAAATGGAACTTGCAAAACAACTGCTACTGTTGGCGATAAGATGTATGTCATTGGTGGAGCTGATGATGGAACTTTGTCCATTGAAGTTCAAATTTTTGACGGTAGTCTTGGAGAATGGGTTCGTCCCACTGTGCGTGGCACCAAACCCGTGTTGTGCAATGGCCTCTCAGCAGTGCCTTTGGAAGACCGAATACTGATTCTTAAGAAGGGTTCTAAGCCTGATGATCGGATATGGTTCCTGGAGATTGACACCCAATATGTTAGGCAGCAGCAAAAAATTTTGGGGACTGAGGTAGTTGCATGGAGTAAAGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTAGGCAAAGGAACACTGATATCAATGCTTATGAAGGAATTTCCATCTATGTTTGGTTTTTCCGTGAGCCACACCACCCGTGCTCCAAGAGGTATCGAGAAAGATGGGGTTCATTACCATTTTACTGAGAAGAGTATAATGGAGAAAGAGATCAAAGAAGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGCAATCTGTATGGAACTAGTGTTGAGGCTGTCGAACTGGTAGCAGATGCAGGGAAAAGATGTATTCTTGATATTGACGTTCAAGGTGCAAGATCTGTGAGGGCTAGTACGCTTGAAGCTATATTCATCTTTATCTGCCCCCCATCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGGGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTACGAAATGCTGATGCTGAGATTGAGCAAGGGAAATCTTCTCAAATATTTGATTTCATCCTATACAATGACAATCTTGAGGAGTGTCATGAGAGACTTAAGAAACTATTGGGACTTGACGATTTTATTGATTTACCAATGGATCATTCAGTGTCAAAAATTGATAACAAAATCATCATAAACTGCATCTCCTCAGGAGAGAAGGAATCAAAGAATTTGGTCATTTTGGATGTTTCCTCACTAAAAGGGGGTGCACCTGGACGGACAAGAGGCCTAAATTTCCAAGCCATTGGCTCTTTCTCAAATGGCTTGAATGGGATAGATCAACTTAGCTAA >Glyma19g32290.2 sequence type=CDS gene model=Glyma19g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACTTGCAAAACAACTGCTACTGTTGGCGATAAGATGGGTTCGTCCCACTGTGCGTGGCACCAAACCCGTGTTGTGCAATGGCCTCTCAGCAGTGCCTTTGGAAGACCGAATACTGATTCTTAAGAAGGGTTCTAAGCCTGATGATCGGATATGGTTCCTGGAGATTGACACCCAATATGTTAGGCAGCAGCAAAAAATTTTGGGGACTGAGGTAGTTGCATGGAGTAAAGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTAGGCAAAGGAACACTGATATCAATGCTTATGAAGGAATTTCCATCTATGTTTGGTTTTTCCGTGAGCCACACCACCCGTGCTCCAAGAGGTATCGAGAAAGATGGGGTTCATTACCATTTTACTGAGAAGAGTATAATGGAGAAAGAGATCAAAGAAGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGCAATCTGTATGGAACTAGTGTTGAGGCTGTCGAACTGGTAGCAGATGCAGGGAAAAGATGTATTCTTGATATTGACGTTCAAGGTGCAAGATCTGTGAGGGCTAGTACGCTTGAAGCTATATTCATCTTTATCTGCCCCCCATCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGGGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTACGAAATGCTGATGCTGAGATTGAGCAAGGGAAATCTTCTCAAATATTTGATTTCATCCTATACAATGACAATCTTGAGGAGTGTCATGAGAGACTTAAGAAACTATTGGGACTTGACGATTTTATTGATTTACCAATGGATCATTCAGTGTCAAAAATTGATAACAAAATCATCATAAACTGCATCTCCTCAGGAGAGAAGGAATCAAAGAATTTGGTCATTTTGGATGTTTCCTCACTAAAAGGGGGTGCACCTGGACGGACAAGAGGCCTAAATTTCCAAGCCATTGGCTCTTTCTCAAATGGCTTGAATGGGATAGATCAACTTAGCTAA
>Glyma19g32290.1 sequence type=predicted peptide gene model=Glyma19g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEAPALLVDDVQDGALNGLELKNGTCKTTATVGDKMYVIGGADDGTLSIEVQIFDGSLGEWVRPTVRGTKPVLCNGLSAVPLEDRILILKKGSKPDDRIWFLEIDTQYVRQQQKILGTEVVAWSKGVIGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGIEKDGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVELVADAGKRCILDIDVQGARSVRASTLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLRNADAEIEQGKSSQIFDFILYNDNLEECHERLKKLLGLDDFIDLPMDHSVSKIDNKIIINCISSGEKESKNLVILDVSSLKGGAPGRTRGLNFQAIGSFSNGLNGIDQLS* >Glyma19g32290.2 sequence type=predicted peptide gene model=Glyma19g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELAKQLLLLAIRWVRPTVRGTKPVLCNGLSAVPLEDRILILKKGSKPDDRIWFLEIDTQYVRQQQKILGTEVVAWSKGVIGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGIEKDGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVELVADAGKRCILDIDVQGARSVRASTLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLRNADAEIEQGKSSQIFDFILYNDNLEECHERLKKLLGLDDFIDLPMDHSVSKIDNKIIINCISSGEKESKNLVILDVSSLKGGAPGRTRGLNFQAIGSFSNGLNGIDQLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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