Glyma19g32220 - SoyBase

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Report for Sequence Feature Glyma19g32220

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39982415
stop:	39984519
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g32220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41835	AT	Annotation by Michelle Graham. TAIR10: zinc finger (C2H2 type, AN1-like) family protein \| chr2:17458020-17459414 REVERSE LENGTH=279	SoyBase	E_val: 1.00E-112	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3183	KOG	Predicted Zn-finger protein	JGI		ISS
PTHR14677	Panther	ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED	JGI		ISS
PTHR14677:SF2	Panther	gb def: hypothetical orf, ynl155wp [saccharomyces cerevisiae]	JGI		ISS
PF01428	PFAM	AN1-like Zinc finger	JGI		ISS
UniRef100_I1N915	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N915_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5NDD4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Somatic embryogenesis zinc finger 2 n=1 Tax=Cucumis sativus RepID=Q5NDD4_CUCSA	SoyBase	E_val: 5.00E-141	ISS

Expression Patterns of Glyma19g32220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g32220

Paralog	Evidence	Comments
Glyma03g29400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g32220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g140400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g32220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g32220

Limit To All Plant Sequences

>Glyma19g32220.1   sequence type=CDS   gene model=Glyma19g32220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACTCCGGAATTTCCTCATCTCGGCAAGCATTGCTCTGTTTCTTATTGCAAGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGCAATCAGGTATATTGTTTGTTGCATCGAGGTTATATTAAACATAAGTGCACAAAGGCCAACAAACAAGATGTCACAGTTGCCATATGTCCTCTCTGTGCCAAAGGAGTTCGCCTCATTCCAGATCAAGACCCTAACATAACATGGGACAACCATGTTAACGTTGATTGCGACCCATCAAATTACGAGAAAGTCACAGAGAAGAGAAAATGCCCTGCCCCCGGATGCAAAGAGGTCTTGGTATTCTCCAACACAATCAAGTGCAGGGACTGCCTGAAAGACCATTGCTTGAAGCACCGGTTCGGCCCCGATCACAAATGTTCTGGTCCCCAAAAGTTGGAGACAAGTTTTTCATTCATGGGTCTTTTGAATAGGAGTAGAAAAGAGGGGCCAAAGCCCAATTTAGCTTCAACAACATCATCTAAGTGGAGTTCAAGCTTTCTCAACGTGGCCTCTAATATTCGCGCCTCAGCTGAAACGGGCATGTCGAAATTGAGCGATGAAATTAACCAAGTTTGGCAGGCAGCTACTACTAGAGATGGGATGGGGCAGAGCAGTGGCAGTGGAAATAGAAATGATCACCAAGTGGAGCAATGCCCTCAGTGTAGATCAAAGTTTTCCTCTGTGACTGCTTTGGTGGATCATGTGCAACAGGTTCATGAAAGAAATGGGAACCGATTAGGGGTTAAGAAGATTGATGCATGTCCTAAGTGTAGTAAGGGATTTCTAGACCCTGTGTCCCTTGTGGAGCATGTTGAGAGGGATCATGGAGGTGGTTCTGGAGCGTAG

Predicted protein sequences of Glyma19g32220

Limit To All Plant Sequences

>Glyma19g32220.1   sequence type=predicted peptide   gene model=Glyma19g32220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTPEFPHLGKHCSVSYCKQLDFLPFTCDRCNQVYCLLHRGYIKHKCTKANKQDVTVAICPLCAKGVRLIPDQDPNITWDNHVNVDCDPSNYEKVTEKRKCPAPGCKEVLVFSNTIKCRDCLKDHCLKHRFGPDHKCSGPQKLETSFSFMGLLNRSRKEGPKPNLASTTSSKWSSSFLNVASNIRASAETGMSKLSDEINQVWQAATTRDGMGQSSGSGNRNDHQVEQCPQCRSKFSSVTALVDHVQQVHERNGNRLGVKKIDACPKCSKGFLDPVSLVEHVERDHGGGSGA*

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