Glyma19g32070 - SoyBase

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Report for Sequence Feature Glyma19g32070

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39842978
stop:	39849631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g32070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13630	AT	Annotation by Michelle Graham. TAIR10: magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) \| chr5:4387567-4392082 REVERSE LENGTH=1381	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009706	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane	SoyBase	N/A	ISS
GO:0010007	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: magnesium chelatase complex	SoyBase	N/A	ISS
GO:0016851	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium chelatase activity	SoyBase	N/A	ISS
PTHR23304	Panther	UNCHARACTERIZED	JGI		ISS
PTHR23304:SF77	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02514	PFAM	CobN/Magnesium Chelatase	JGI		ISS
PF11965	PFAM	Domain of unknown function (DUF3479)	JGI		ISS
UniRef100_I1N906	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N906_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O65808	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Magnesium chelatase subunit n=1 Tax=Glycine max RepID=O65808_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g32070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g32070

Paralog	Evidence	Comments
Glyma03g29330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g32070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g139300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g32070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g32070

Limit To All Plant Sequences

>Glyma19g32070.1   sequence type=CDS   gene model=Glyma19g32070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTTGGTATCTTCACCATTTACTCTTCCAAGCTCTAAACCTGACCAGCTTCATTCTCTTGCCCAGAAGCATCTTTTTCTTCATTCTTTCCTTCCCAAGAAAGCCAATTACAATGGTAGCTCAAAATCCTCTCTGAGAGTGAAATGTGCTGTCATTGGCAATGGCCTATTCACCCAAACCACCCAAGAAGTTCGTAGAATAGTTCCAGAGAATGACCAAAACTTGCCAACAGTTAAAATTGTGTATGTGGTCCTTGAGGCTCAGTACCAATCATCCATCACTGCTGCAGTGATAGCTCTCAACAGCAAAAGGAAGCATGCTTCCTTTGAGGTTGTGGGTTACTTGGTTGAGGAGCTTCGTGACGCGGCGACGTACAAGACCTTCTGCAAGGACTTGGAGGATGCTAACATCTTCATTGGTTCCTTGATTTTTGTGGAGGAGCTCGCCCTCAAGATCAAGGCTGCAGTGGAGAAAGAAAGGGACAGGCTTGATGCAGTTTTGGTGTTCCCATCAATGCCTGAAGTGATGAGGCTCAACAAGTTGGGTTCTTTCAGCATGTCACAGCTTGGGCAGTCTAAGAGCCCCTTTTTCCAGCTGTTCAAGAGAAAGAAGCCTCAGTCTGCTGGCTTTGCTGATAGCATGTTGAAGCTTGTGAGGACATTGCCAAAGGTTTTGAAGTATTTGCCAAGTGATAAAGCTCAGGATGCCAGGCTCTACATACTGAGTCTGCAGTTTTGGCTTGGGGGGTCTCCTGATAACTTGCAGAATTTCCTGAAAATGATTTCTGGATCGTATATTCCGGCGCTGAAAGGGACGAAGATCGAGTATTCGGAGCCGGTTTTGTACTTGGATGTCGGGATTTGGCACCCTCTGGCTCCTTGTATGTATGATGATGTGAAGGAGTATTTGAATTGGTATGGAACCAGAAGGGATGCAAATGAGAAGCTGAAGAGTCCGAGTGCGCCTGTCATTGGTTTGGTTTTGCAGAGGAGTCACATTGTGACTGGTGATGATGGACACTATGTGGCTGTGATCATGGAGCTGGAGGCTAGAGGGGCTAAGGTCATTCCCATTTTTGCCGGTGGACTTGACTTTTCAGGGCCAGTGGAGAAGTTCTTCATCGATCCAATTACGAAAAAACCGTTTGTAAATTCTGTGGTTTCCCTCACTGGCTTTGCTCTTGTTGGAGGCCCTGCAAGGCAGGACCATCCAAGGGCGGTCGAGGCGTTGATGAAACTTGATGTTCCTTACATTGTTGCCTTGCCGTTGGTGTTTCAGACAACAGAAGAATGGCTCAACAGTACTCTTGGTCTGCATCCAATTCAGGTTGCTCTTCAAGTTGCTCTGCCAGAGCTAGATGGAGGCATGGAGCCTATTGTTTTCGCTGGTCGAGATCCCAAAACAGGAAAATCACATGCTCTTCATAAGAGAGTGGAACAGCTCTGCATCAGGGCAATCAGATGGGCTGAATTGAAAAGAAAATCAAAGGAAGAGAAGAAACTAGCAATTACTGTCTTCAGTTTCCCTCCAGACAAAGGAAACGTGGGAACTGCTGCCTATCTCAATGTCTTCGCCTCCATATACTCAGTTATGAAAGAACTAAAAAAAGATGGTTATAATGTTGACGGCCTTCCAGAGACTCCAGAAGCTTTGATTGAAGATGTAATTCATGACAAAGAAGCTCAATTCAGCAGCCCAAATCTGAATATTGCTTACAAAATGAGTGTCCGCGAGTACCAAAATTTGACTCCCTATGCCACAGCACTGGAGGAGAATTGGGGAAAACCCCCTGGCAATCTGAATGCAGATGGAGAGAATCTTTTGGTATATGGGAAACAGTATGGTAATGTCTTTATAGGTGTTCAGCCTACATTTGGCTATGAAGGGGATCCAATGAGGCTGCTTTTCTCCAAATCTGCCAGCCCTCATCATGGATTTGCAGCATATTATTCCTTTGTTGAGAAAATCTTCAAAGCTGATGCTGTACTTCATTTTGGGACACATGGTTCCCTTGAATTCATGCCTGGAAAACAGGTGGGGATGAGTGATGTCTGTTACCCTGACAGTCTGATTGGGAATATTCCAAATGTATATTACTATGCTGCAAACAACCCTTCTGAGGCCACCATCGCCAAGCGCAGGAGTTATGCAAACACCATTAGCTATCTGACTCCTCCAGCAGAAAATGCTGGGCTATACAAAGGTCTTAAGCAGTTAAGTGAGCTCATCTCCTCTTATCAGTCCCTCAAAGACACAGGCCGTGGGGCACAAATTGTGAGTTCAATTATCAGCACGGCTAAACAATGTAATCTTGACAAGGATGTGACACTCCCAAATGAGGGTGAGGAGATCCCTCTTAAAGAGCGTGACCTTGTGGTTGGAAAGGTGTATTCCAAGATCATGGAGATTGAGTCTCGTCTGTTACCTTGTGGGCTTCATGTCATTGGTGAGCCTCCCTCAGCCTTGGAAGCTGTTGCTACACTGGTCAACATTGCTGCTCTTGATCGTCCTGAAGATGGTATTTCTTCTCTTCCATCAATATTAGCTGACACTGTAGGAAGAGATATAGAAGATGTGTATAGAGGAAGTAACAAAGGAATATTGAAGGATGTGGAGCTTCTTAGGCAAATAACCGAGGCATCACGTGGAGCAATCACTGCCTTTGTGGAGCGTACTACCAATAATATGGGCCAAGTTGTTGATGTAGCTGATAAGCTTAGCTCAATCCTTGGATTTGGCATAAACGAGCCATGGATACAGTACTTGTCAAACACCAAATTTTACCGAGCTGATAGGGAAAAACTTAGAACCTTGTTTGTGTTCCTGGGAGAATGTTTGAAGTTGGTTGTGGCTGATAATGAAGTGGGAAGTTTAAAACAAGCCTTGGAAGGTAAATATGTGGAGCCAGGGCCTGGTGGTGACCCAATAAGAAATCCAAAAGTCTTGCCAACAGGAAAGAATATTCATGCCCTGGACCCACAAGCTATTCCTACAACTGCAGCGATGCAGAGTGCCAAAATAGTGGTAGATAGGTTGATTGAGAGGCAGAAAGCTGAGAATGGGGGAAAATATCCTGAGACAATTGCACTTGTATTGTGGGGTACTGATAATATTAAAACATATGGTGAATCCCTGGCTCAAGTGTTGTGGATGATTGGTGTGGAACCAGTGGCTGATACCTTTGGTAGGGTAAACCGGGTGGAACCTGTAAGTCTTGAAGAGCTTGGAAGGCCTAGGATTGATGTAGTTGTTAATTGCTCAGGAGTGTTTAGAGACCTTTTCATCAATCAGATGAATCTTCTGGATAGAGCAGTGAAGATGGTTGCTGAATTAGATGAACCAGCAGAGCAAAACTATGTAAGAAAGCATGCATTAGAACAAGCTCAAGCCCTTGGAGTTGAAGTTCGAGAGGCAGCAACAAGGATCTTCTCCAATGCTTCTGGCTCCTACTCCTCAAACATAAACCTGGCTGTGGAGAATTCTTCATGGAATGACGAGAAGCAGCTCCAGGACATGTATCTTAGCAGAAAGTCTTTTGCTTTTGATTCTGATGCTCCTGGTGCTGGCATGACTGAGAAAAGAAAAGTCTTTGAGATGGCTCTGAGCACAGCAGATGCCACATTCCAAAACCTTGATTCATCAGAAATTTCCCTCACTGATGTCAGTCATTACTTTGACTCAGACCCGACTAATCTGGTTCAAAATCTAAGGAAAGATGGCAAGAAGCCTAGTGCATACATTGCTGATACAACCACTGCCAATGCTCAGGTACGTACACTTTCTGAGACGGTTAGACTTGATGCTAGAACCAAGCTGTTGAATCCAAAGTGGTATGAAGGCATGTTGTCTACTGGATATGAGGGTGTACGCGAGATCGAGAAGAGACTCACCAATACAGTGGGATGGAGTGCAACTTCTGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACTTTCATTCAGGATGAGCAAATGCTGAACAAGCTCATGAACACTAATCCAAACTCCTTCAGGAAACTAGTGCAGACATTCTTGGAAGCCAATGGACGTGGTTATTGGGAAACTTCAGAAGATAATATTGAAAAGCTCAGGCAGTTGTATTCAGAAGTGGAAGACAAAATTGAAGGCATTGATCGCTGA

Predicted protein sequences of Glyma19g32070

Limit To All Plant Sequences

>Glyma19g32070.1   sequence type=predicted peptide   gene model=Glyma19g32070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLVSSPFTLPSSKPDQLHSLAQKHLFLHSFLPKKANYNGSSKSSLRVKCAVIGNGLFTQTTQEVRRIVPENDQNLPTVKIVYVVLEAQYQSSITAAVIALNSKRKHASFEVVGYLVEELRDAATYKTFCKDLEDANIFIGSLIFVEELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKRKKPQSAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYIPALKGTKIEYSEPVLYLDVGIWHPLAPCMYDDVKEYLNWYGTRRDANEKLKSPSAPVIGLVLQRSHIVTGDDGHYVAVIMELEARGAKVIPIFAGGLDFSGPVEKFFIDPITKKPFVNSVVSLTGFALVGGPARQDHPRAVEALMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCIRAIRWAELKRKSKEEKKLAITVFSFPPDKGNVGTAAYLNVFASIYSVMKELKKDGYNVDGLPETPEALIEDVIHDKEAQFSSPNLNIAYKMSVREYQNLTPYATALEENWGKPPGNLNADGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGAQIVSSIISTAKQCNLDKDVTLPNEGEEIPLKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDGISSLPSILADTVGRDIEDVYRGSNKGILKDVELLRQITEASRGAITAFVERTTNNMGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADREKLRTLFVFLGECLKLVVADNEVGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKIVVDRLIERQKAENGGKYPETIALVLWGTDNIKTYGESLAQVLWMIGVEPVADTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPAEQNYVRKHALEQAQALGVEVREAATRIFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDSDAPGAGMTEKRKVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEQMLNKLMNTNPNSFRKLVQTFLEANGRGYWETSEDNIEKLRQLYSEVEDKIEGIDR*

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