Glyma19g32051 - SoyBase

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Report for Sequence Feature Glyma19g32051

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39829804
stop:	39833028
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g32051

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G52520	AT	Annotation by Michelle Graham. TAIR10: FAR1-related sequence 6 \| chr1:19565933-19568248 FORWARD LENGTH=703	SoyBase	E_val: 2.00E-100	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
PF04434	PFAM	SWIM zinc finger	JGI		ISS
PF10551	PFAM	MULE transposase domain	JGI		ISS
UniRef100_I1N904	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N904_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2QZM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZM0_ORYSJ	SoyBase	E_val: 3.00E-158	ISS

Expression Patterns of Glyma19g32051

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g32051 not represented in the dataset	Glyma19g32051 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g32051

Paralog	Evidence	Comments
Glyma03g29310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g32051 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g139100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g32051

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g32051

Limit To All Plant Sequences

>Glyma19g32051.2   sequence type=transcript   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGCTCCCTCCTACTTTCACACTTCCTCCCCAATGGATGCGTTTGTTTTAAGAGAATAGTAGAAATTGGATAGAAATAAGAGACGAATTATGGATTCATCTGACAATGCGAGATGCAAGTGAGAGTCAATCAGTAACATAATATTGTGCAAAATTGATTATATCATCATTTAAGATTAGATTTTAGAGTCGCTATGGTTTTCTTAATCATTTCTCGCCACTTTTGCGTGAAAATGAATTTGAGTGAGATCCAACTTTTTTTCCACCCTAATTCTATATATTAAACTCAAGTTTGCTGCTACTTCCTTTTTTCACGTCTCCTCGTCAAATTTTTTTTCATCTCTTCCCCACCAAATACAGTGTATACAAAAAAAATAAAAAAAAAATTGAACAAGACTGAATAATTGAAAACCCAAAATGTCCCCAAACCTATAGTGAAACGGTGCGTTAAGTCTTCTCCTCCTCCCCGAACAAAAAACACTGCTTATAGGAGGACTGGGATCGCACTTCAGAGGAAGTCAAGAGTAACATTAATTAGGGCACAGAACAAGCAGCATTTTGAGCTTTGGTTGCAGTTTCATCATGATCCTTGATATTGTGGGAAATTGTGAACAAATGCAGCCGAATCATCCGTAGTTGCAGTTGCGGTGACCCTAAATCGTAGATAGTTTTTTAGATTCTTGAAATGGGTGAACTATGTCATTCACGTGCTCCATTAGACATTAATTCCAGTGGGAGTGAGGAAAACTTGGTCTCTATTTCACCAGAAGAAATTAAGCTTGAACCCATTAGCTTTGATGGGAATGATGCTTGTCCTGTGCCACGGCCTGGAATGGTATTTAGTTCAGAGGCTGAGGCCAGATTGTACTACACAAAATATGCCAACCAAATGGGCTTTGGCATCATGACTAGAACCTCAAAAAAGGGACGTGATGGCAAAGTTAAATATTTAATACTTGTATGCTCTGGAATAACAAGAAGTGATGCTGCAAGGAAACAGTATTGTGCAGCTAGGATCAATTTGACTTTACGTAAAGATGGAACCTACCGAATTAATTCAGCTACTCTTGGTCATAGTCATGAATTGGGTTCACATCATCTACTCTCAAGTGATATTGACACGAGGGGTAAAAGGACATTGGATCAAGAAGTTGTTGACATGGGTGTTAAGAGGATATCAGACAAAAATGAATGCAGATACTACCTTCAGAAAGAAAGACATTTGATTGGGGAGAATGGAGATGGTGAAGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGTGATTGACTTGGATGATTTCTTCTGTGTGAGGAATGTTTTTTGGGCAGATGGAAAGAGCAGAGCTGCATATGAATCGTTTGGTGATGTGGTGATAGTTGATACTACATGTCTTTCTAATCGCTACAAAGTTCCGCTTGTAACTTTTGTTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGCTGTTATCGTATGAAGACTCAGAGTCATTTGCTTGGTTGTTTCAATCATTGTTGCATTGCATGTCTGATGTTCCCCCTCAAGGAATCATAACAGATCATTGCTGCAAGACCATGCAGAAAGCAGTTGAAACTGTATATCCCTCCACTCGACATCGGTGGTGTTTATCAAATATAATGGAAAAACTTCCCCAACTAATCCATGGATATGCTAATTACAAGTCCTTAAGAGATCATTTGCAGAATGTTGTATATGACACACCTACAATAAGTGAATTTGAGCAGAAATGGAAGAAGATTGTGGAGGATTTTGACCTCAAGGACAATAAATGGTTGAAAGAGTTGTTCCTTGAGAGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGAGTTCTGGGCTGGAATGTCTATTAATCCACACAATGAAAGCATGCATGCATTTTTTGATGGATATGTAAGCCGGCTAACAACTCTGAAGCAATTTGTTGATCAGTATGATAATGCTTTGCAATATAAGGCTGAGAAAGAATATGTAGCTGACATACATTCATCAAGTAACAGTCAAGCTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAAGCTGCATACACTCATGCCAAGTTTCTGGAGGTTCAACATGAATTTGTTGGAAAGGCAGATTGTAATGTGTCTGTTGCCTCTGATGATGGTTCTATTTTTCACTACAATGTCATTGAGGATGGGATAATAGATGATAAGCCTAAGGAATCCGTGGTTGAAGTCATATATAACAGGGTTGATTGTGATGTAAAATGTAGTTGTCACTTGTTTGAGTTCAGAGGCATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTGAAGGAGGTCCCCTGTAAATATATTTTGGATAGGTGGAGGAAAAATATTCGAAGGAAGTATGCTTATATCAAAACCAGCTATGGTGTTCAGCATTTTGAACCTCATGTGCAGAGGCTTGAACTATTATGCAATCAATTCAACAGTATTGCTGCTGTTGCTGCAGAATTTGAGGATACAAGTTCTTTTGTAAAGGATAACCTATGTAACTTAAAGGAGAAGCTTGAAGCATGGACAACCTTATTGAGGAACTCATCTCAGGTGGATGTAGAGAAATGTAATTATATGATGGATTGGGAATGAATTTTTGTAGGATAAAATAATATTTTAACTCATGTAATTATGATAAAATTTGATTTTAATCTGTAAAAAAATTCTGTAAAAAATTATCTTGGTTCCAGTTCTCATAAACTTCAGAATTTTGAAATGTATTTAATGAAGTAATATGTATTTAAACGTGCGAGGTACATTGTTT

Coding sequences of Glyma19g32051

Limit To All Plant Sequences

>Glyma19g32051.1   sequence type=CDS   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAACTATGTCATTCACGTGCTCCATTAGACATTAATTCCAGTGGGAGTGAGGAAAACTTGGTCTCTATTTCACCAGAAGAAATTAAGCTTGAACCCATTAGCTTTGATGGGAATGATGCTTGTCCTGTGCCACGGCCTGGAATGGTATTTAGTTCAGAGGCTGAGGCCAGATTGTACTACACAAAATATGCCAACCAAATGGGCTTTGGCATCATGACTAGAACCTCAAAAAAGGGACGTGATGGCAAAGTTAAATATTTAATACTTGTATGCTCTGGAATAACAAGAAGTGATGCTGCAAGGAAACAGTATTGTGCAGCTAGGATCAATTTGACTTTACGTAAAGATGGAACCTACCGAATTAATTCAGCTACTCTTGGTCATAGTCATGAATTGGGTTCACATCATCTACTCTCAAGTGATATTGACACGAGGGGTAAAAGGACATTGGATCAAGAAGTTGTTGACATGGGTGTTAAGAGGATATCAGACAAAAATGAATGCAGATACTACCTTCAGAAAGAAAGACATTTGATTGGGGAGAATGGAGATGGTGAAGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGTGATTGACTTGGATGATTTCTTCTGTGTGAGGAATGTTTTTTGGGCAGATGGAAAGAGCAGAGCTGCATATGAATCGTTTGGTGATGTGGTGATAGTTGATACTACATGTCTTTCTAATCGCTACAAAGTTCCGCTTGTAACTTTTGTTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGCTGTTATCGTATGAAGACTCAGAGTCATTTGCTTGGTTGTTTCAATCATTGTTGCATTGCATGTCTGATGTTCCCCCTCAAGGAATCATAACAGATCATTGCTGCAAGACCATGCAGAAAGCAGTTGAAACTGTATATCCCTCCACTCGACATCGGTGGTGTTTATCAAATATAATGGAAAAACTTCCCCAACTAATCCATGGATATGCTAATTACAAGTCCTTAAGAGATCATTTGCAGAATGTTGTATATGACACACCTACAATAAGTGAATTTGAGCAGAAATGGAAGAAGATTGTGGAGGATTTTGACCTCAAGGACAATAAATGGTTGAAAGAGTTGTTCCTTGAGAGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGAGTTCTGGGCTGGAATGTCTATTAATCCACACAATGAAAGCATGCATGCATTTTTTGATGGATATGTAAGCCGGCTAACAACTCTGAAGCAATTTGTTGATCAGTATGATAATGCTTTGCAATATAAGGCTGAGAAAGAATATGTAGCTGACATACATTCATCAAGTAACAGTCAAGCTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAAGCTGCATACACTCATGCCAAGTTTCTGGAGGTTCAACATGAATTTGTTGGAAAGGCAGATTGTAATGTGTCTGTTGCCTCTGATGATGGTTCTATTTTTCACTACAATGTCATTGAGGATGGGATAATAGATGATAAGCCTAAGGAATCCGTGGTTGAAGTCATATATAACAGGGTTGATTGTGATGTAAAATGTAGTTGTCACTTGTTTGAGTTCAGAGGCATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTGAAGGAGGTCCCCTGTAAATATATTTTGGATAGGTGGAGGAAAAATATTCGAAGGAAGTATGCTTATATCAAAACCAGCTATGGTGTTCAGCATTTTGAACCTCATGTGCAGAGGCTTGAACTATTATGCAATCAATTCAACAGTATTGCTGCTGTTGCTGCAGAATTTGAGGATACAAGTTCTTTTGTAAAGGATAACCTATGTAACTTAAAGGAGAAGCTTGAAGCATGGACAACCTTATTGAGGAACTCATCTCAGGTGGATGTAGAGAAATGTAATTATATGATGGATTGGGAATGA

>Glyma19g32051.2   sequence type=CDS   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAACTATGTCATTCACGTGCTCCATTAGACATTAATTCCAGTGGGAGTGAGGAAAACTTGGTCTCTATTTCACCAGAAGAAATTAAGCTTGAACCCATTAGCTTTGATGGGAATGATGCTTGTCCTGTGCCACGGCCTGGAATGGTATTTAGTTCAGAGGCTGAGGCCAGATTGTACTACACAAAATATGCCAACCAAATGGGCTTTGGCATCATGACTAGAACCTCAAAAAAGGGACGTGATGGCAAAGTTAAATATTTAATACTTGTATGCTCTGGAATAACAAGAAGTGATGCTGCAAGGAAACAGTATTGTGCAGCTAGGATCAATTTGACTTTACGTAAAGATGGAACCTACCGAATTAATTCAGCTACTCTTGGTCATAGTCATGAATTGGGTTCACATCATCTACTCTCAAGTGATATTGACACGAGGGGTAAAAGGACATTGGATCAAGAAGTTGTTGACATGGGTGTTAAGAGGATATCAGACAAAAATGAATGCAGATACTACCTTCAGAAAGAAAGACATTTGATTGGGGAGAATGGAGATGGTGAAGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGTGATTGACTTGGATGATTTCTTCTGTGTGAGGAATGTTTTTTGGGCAGATGGAAAGAGCAGAGCTGCATATGAATCGTTTGGTGATGTGGTGATAGTTGATACTACATGTCTTTCTAATCGCTACAAAGTTCCGCTTGTAACTTTTGTTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGCTGTTATCGTATGAAGACTCAGAGTCATTTGCTTGGTTGTTTCAATCATTGTTGCATTGCATGTCTGATGTTCCCCCTCAAGGAATCATAACAGATCATTGCTGCAAGACCATGCAGAAAGCAGTTGAAACTGTATATCCCTCCACTCGACATCGGTGGTGTTTATCAAATATAATGGAAAAACTTCCCCAACTAATCCATGGATATGCTAATTACAAGTCCTTAAGAGATCATTTGCAGAATGTTGTATATGACACACCTACAATAAGTGAATTTGAGCAGAAATGGAAGAAGATTGTGGAGGATTTTGACCTCAAGGACAATAAATGGTTGAAAGAGTTGTTCCTTGAGAGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGAGTTCTGGGCTGGAATGTCTATTAATCCACACAATGAAAGCATGCATGCATTTTTTGATGGATATGTAAGCCGGCTAACAACTCTGAAGCAATTTGTTGATCAGTATGATAATGCTTTGCAATATAAGGCTGAGAAAGAATATGTAGCTGACATACATTCATCAAGTAACAGTCAAGCTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAAGCTGCATACACTCATGCCAAGTTTCTGGAGGTTCAACATGAATTTGTTGGAAAGGCAGATTGTAATGTGTCTGTTGCCTCTGATGATGGTTCTATTTTTCACTACAATGTCATTGAGGATGGGATAATAGATGATAAGCCTAAGGAATCCGTGGTTGAAGTCATATATAACAGGGTTGATTGTGATGTAAAATGTAGTTGTCACTTGTTTGAGTTCAGAGGCATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTGAAGGAGGTCCCCTGTAAATATATTTTGGATAGGTGGAGGAAAAATATTCGAAGGAAGTATGCTTATATCAAAACCAGCTATGGTGTTCAGCATTTTGAACCTCATGTGCAGAGGCTTGAACTATTATGCAATCAATTCAACAGTATTGCTGCTGTTGCTGCAGAATTTGAGGATACAAGTTCTTTTGTAAAGGATAACCTATGTAACTTAAAGGAGAAGCTTGAAGCATGGACAACCTTATTGAGGAACTCATCTCAGGTGGATGTAGAGAAATGTAATTATATGATGGATTGGGAATGA

Predicted protein sequences of Glyma19g32051

Limit To All Plant Sequences

>Glyma19g32051.1   sequence type=predicted peptide   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGELCHSRAPLDINSSGSEENLVSISPEEIKLEPISFDGNDACPVPRPGMVFSSEAEARLYYTKYANQMGFGIMTRTSKKGRDGKVKYLILVCSGITRSDAARKQYCAARINLTLRKDGTYRINSATLGHSHELGSHHLLSSDIDTRGKRTLDQEVVDMGVKRISDKNECRYYLQKERHLIGENGDGEALQKYLVRMQEQDRNFFYVIDLDDFFCVRNVFWADGKSRAAYESFGDVVIVDTTCLSNRYKVPLVTFVGVNHHGQSVLFGCGLLSYEDSESFAWLFQSLLHCMSDVPPQGIITDHCCKTMQKAVETVYPSTRHRWCLSNIMEKLPQLIHGYANYKSLRDHLQNVVYDTPTISEFEQKWKKIVEDFDLKDNKWLKELFLERHRWAPSFVRGEFWAGMSINPHNESMHAFFDGYVSRLTTLKQFVDQYDNALQYKAEKEYVADIHSSSNSQACVTKSPIERQFQAAYTHAKFLEVQHEFVGKADCNVSVASDDGSIFHYNVIEDGIIDDKPKESVVEVIYNRVDCDVKCSCHLFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNIRRKYAYIKTSYGVQHFEPHVQRLELLCNQFNSIAAVAAEFEDTSSFVKDNLCNLKEKLEAWTTLLRNSSQVDVEKCNYMMDWE*

>Glyma19g32051.2   sequence type=predicted peptide   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGELCHSRAPLDINSSGSEENLVSISPEEIKLEPISFDGNDACPVPRPGMVFSSEAEARLYYTKYANQMGFGIMTRTSKKGRDGKVKYLILVCSGITRSDAARKQYCAARINLTLRKDGTYRINSATLGHSHELGSHHLLSSDIDTRGKRTLDQEVVDMGVKRISDKNECRYYLQKERHLIGENGDGEALQKYLVRMQEQDRNFFYVIDLDDFFCVRNVFWADGKSRAAYESFGDVVIVDTTCLSNRYKVPLVTFVGVNHHGQSVLFGCGLLSYEDSESFAWLFQSLLHCMSDVPPQGIITDHCCKTMQKAVETVYPSTRHRWCLSNIMEKLPQLIHGYANYKSLRDHLQNVVYDTPTISEFEQKWKKIVEDFDLKDNKWLKELFLERHRWAPSFVRGEFWAGMSINPHNESMHAFFDGYVSRLTTLKQFVDQYDNALQYKAEKEYVADIHSSSNSQACVTKSPIERQFQAAYTHAKFLEVQHEFVGKADCNVSVASDDGSIFHYNVIEDGIIDDKPKESVVEVIYNRVDCDVKCSCHLFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNIRRKYAYIKTSYGVQHFEPHVQRLELLCNQFNSIAAVAAEFEDTSSFVKDNLCNLKEKLEAWTTLLRNSSQVDVEKCNYMMDWE*

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