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Report for Sequence Feature Glyma19g32051

Feature Type:gene_model
Chromosome:Gm19
Start:39829804
stop:39833028
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G52520AT Annotation by Michelle Graham. TAIR10: FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703 SoyBaseE_val: 2.00E-100ISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PF03101PFAM FAR1 DNA-binding domain JGI ISS
PF04434PFAM SWIM zinc finger JGI ISS
PF10551PFAM MULE transposase domain JGI ISS
UniRef100_I1N904UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N904_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2QZM0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZM0_ORYSJ SoyBaseE_val: 3.00E-158ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g32051 not represented in the dataset

Glyma19g32051 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g29310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g139100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g32051.2   sequence type=transcript   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGCTCCCTCCTACTTTCACACTTCCTCCCCAATGGATGCGTTTGTTTTAAGAGAATAGTAGAAATTGGATAGAAATAAGAGACGAATTATGGATTCATCTGACAATGCGAGATGCAAGTGAGAGTCAATCAGTAACATAATATTGTGCAAAATTGATTATATCATCATTTAAGATTAGATTTTAGAGTCGCTATGGTTTTCTTAATCATTTCTCGCCACTTTTGCGTGAAAATGAATTTGAGTGAGATCCAACTTTTTTTCCACCCTAATTCTATATATTAAACTCAAGTTTGCTGCTACTTCCTTTTTTCACGTCTCCTCGTCAAATTTTTTTTCATCTCTTCCCCACCAAATACAGTGTATACAAAAAAAATAAAAAAAAAATTGAACAAGACTGAATAATTGAAAACCCAAAATGTCCCCAAACCTATAGTGAAACGGTGCGTTAAGTCTTCTCCTCCTCCCCGAACAAAAAACACTGCTTATAGGAGGACTGGGATCGCACTTCAGAGGAAGTCAAGAGTAACATTAATTAGGGCACAGAACAAGCAGCATTTTGAGCTTTGGTTGCAGTTTCATCATGATCCTTGATATTGTGGGAAATTGTGAACAAATGCAGCCGAATCATCCGTAGTTGCAGTTGCGGTGACCCTAAATCGTAGATAGTTTTTTAGATTCTTGAAATGGGTGAACTATGTCATTCACGTGCTCCATTAGACATTAATTCCAGTGGGAGTGAGGAAAACTTGGTCTCTATTTCACCAGAAGAAATTAAGCTTGAACCCATTAGCTTTGATGGGAATGATGCTTGTCCTGTGCCACGGCCTGGAATGGTATTTAGTTCAGAGGCTGAGGCCAGATTGTACTACACAAAATATGCCAACCAAATGGGCTTTGGCATCATGACTAGAACCTCAAAAAAGGGACGTGATGGCAAAGTTAAATATTTAATACTTGTATGCTCTGGAATAACAAGAAGTGATGCTGCAAGGAAACAGTATTGTGCAGCTAGGATCAATTTGACTTTACGTAAAGATGGAACCTACCGAATTAATTCAGCTACTCTTGGTCATAGTCATGAATTGGGTTCACATCATCTACTCTCAAGTGATATTGACACGAGGGGTAAAAGGACATTGGATCAAGAAGTTGTTGACATGGGTGTTAAGAGGATATCAGACAAAAATGAATGCAGATACTACCTTCAGAAAGAAAGACATTTGATTGGGGAGAATGGAGATGGTGAAGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGTGATTGACTTGGATGATTTCTTCTGTGTGAGGAATGTTTTTTGGGCAGATGGAAAGAGCAGAGCTGCATATGAATCGTTTGGTGATGTGGTGATAGTTGATACTACATGTCTTTCTAATCGCTACAAAGTTCCGCTTGTAACTTTTGTTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGCTGTTATCGTATGAAGACTCAGAGTCATTTGCTTGGTTGTTTCAATCATTGTTGCATTGCATGTCTGATGTTCCCCCTCAAGGAATCATAACAGATCATTGCTGCAAGACCATGCAGAAAGCAGTTGAAACTGTATATCCCTCCACTCGACATCGGTGGTGTTTATCAAATATAATGGAAAAACTTCCCCAACTAATCCATGGATATGCTAATTACAAGTCCTTAAGAGATCATTTGCAGAATGTTGTATATGACACACCTACAATAAGTGAATTTGAGCAGAAATGGAAGAAGATTGTGGAGGATTTTGACCTCAAGGACAATAAATGGTTGAAAGAGTTGTTCCTTGAGAGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGAGTTCTGGGCTGGAATGTCTATTAATCCACACAATGAAAGCATGCATGCATTTTTTGATGGATATGTAAGCCGGCTAACAACTCTGAAGCAATTTGTTGATCAGTATGATAATGCTTTGCAATATAAGGCTGAGAAAGAATATGTAGCTGACATACATTCATCAAGTAACAGTCAAGCTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAAGCTGCATACACTCATGCCAAGTTTCTGGAGGTTCAACATGAATTTGTTGGAAAGGCAGATTGTAATGTGTCTGTTGCCTCTGATGATGGTTCTATTTTTCACTACAATGTCATTGAGGATGGGATAATAGATGATAAGCCTAAGGAATCCGTGGTTGAAGTCATATATAACAGGGTTGATTGTGATGTAAAATGTAGTTGTCACTTGTTTGAGTTCAGAGGCATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTGAAGGAGGTCCCCTGTAAATATATTTTGGATAGGTGGAGGAAAAATATTCGAAGGAAGTATGCTTATATCAAAACCAGCTATGGTGTTCAGCATTTTGAACCTCATGTGCAGAGGCTTGAACTATTATGCAATCAATTCAACAGTATTGCTGCTGTTGCTGCAGAATTTGAGGATACAAGTTCTTTTGTAAAGGATAACCTATGTAACTTAAAGGAGAAGCTTGAAGCATGGACAACCTTATTGAGGAACTCATCTCAGGTGGATGTAGAGAAATGTAATTATATGATGGATTGGGAATGAATTTTTGTAGGATAAAATAATATTTTAACTCATGTAATTATGATAAAATTTGATTTTAATCTGTAAAAAAATTCTGTAAAAAATTATCTTGGTTCCAGTTCTCATAAACTTCAGAATTTTGAAATGTATTTAATGAAGTAATATGTATTTAAACGTGCGAGGTACATTGTTT

>Glyma19g32051.1   sequence type=CDS   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAACTATGTCATTCACGTGCTCCATTAGACATTAATTCCAGTGGGAGTGAGGAAAACTTGGTCTCTATTTCACCAGAAGAAATTAAGCTTGAACCCATTAGCTTTGATGGGAATGATGCTTGTCCTGTGCCACGGCCTGGAATGGTATTTAGTTCAGAGGCTGAGGCCAGATTGTACTACACAAAATATGCCAACCAAATGGGCTTTGGCATCATGACTAGAACCTCAAAAAAGGGACGTGATGGCAAAGTTAAATATTTAATACTTGTATGCTCTGGAATAACAAGAAGTGATGCTGCAAGGAAACAGTATTGTGCAGCTAGGATCAATTTGACTTTACGTAAAGATGGAACCTACCGAATTAATTCAGCTACTCTTGGTCATAGTCATGAATTGGGTTCACATCATCTACTCTCAAGTGATATTGACACGAGGGGTAAAAGGACATTGGATCAAGAAGTTGTTGACATGGGTGTTAAGAGGATATCAGACAAAAATGAATGCAGATACTACCTTCAGAAAGAAAGACATTTGATTGGGGAGAATGGAGATGGTGAAGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGTGATTGACTTGGATGATTTCTTCTGTGTGAGGAATGTTTTTTGGGCAGATGGAAAGAGCAGAGCTGCATATGAATCGTTTGGTGATGTGGTGATAGTTGATACTACATGTCTTTCTAATCGCTACAAAGTTCCGCTTGTAACTTTTGTTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGCTGTTATCGTATGAAGACTCAGAGTCATTTGCTTGGTTGTTTCAATCATTGTTGCATTGCATGTCTGATGTTCCCCCTCAAGGAATCATAACAGATCATTGCTGCAAGACCATGCAGAAAGCAGTTGAAACTGTATATCCCTCCACTCGACATCGGTGGTGTTTATCAAATATAATGGAAAAACTTCCCCAACTAATCCATGGATATGCTAATTACAAGTCCTTAAGAGATCATTTGCAGAATGTTGTATATGACACACCTACAATAAGTGAATTTGAGCAGAAATGGAAGAAGATTGTGGAGGATTTTGACCTCAAGGACAATAAATGGTTGAAAGAGTTGTTCCTTGAGAGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGAGTTCTGGGCTGGAATGTCTATTAATCCACACAATGAAAGCATGCATGCATTTTTTGATGGATATGTAAGCCGGCTAACAACTCTGAAGCAATTTGTTGATCAGTATGATAATGCTTTGCAATATAAGGCTGAGAAAGAATATGTAGCTGACATACATTCATCAAGTAACAGTCAAGCTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAAGCTGCATACACTCATGCCAAGTTTCTGGAGGTTCAACATGAATTTGTTGGAAAGGCAGATTGTAATGTGTCTGTTGCCTCTGATGATGGTTCTATTTTTCACTACAATGTCATTGAGGATGGGATAATAGATGATAAGCCTAAGGAATCCGTGGTTGAAGTCATATATAACAGGGTTGATTGTGATGTAAAATGTAGTTGTCACTTGTTTGAGTTCAGAGGCATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTGAAGGAGGTCCCCTGTAAATATATTTTGGATAGGTGGAGGAAAAATATTCGAAGGAAGTATGCTTATATCAAAACCAGCTATGGTGTTCAGCATTTTGAACCTCATGTGCAGAGGCTTGAACTATTATGCAATCAATTCAACAGTATTGCTGCTGTTGCTGCAGAATTTGAGGATACAAGTTCTTTTGTAAAGGATAACCTATGTAACTTAAAGGAGAAGCTTGAAGCATGGACAACCTTATTGAGGAACTCATCTCAGGTGGATGTAGAGAAATGTAATTATATGATGGATTGGGAATGA

>Glyma19g32051.2   sequence type=CDS   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAACTATGTCATTCACGTGCTCCATTAGACATTAATTCCAGTGGGAGTGAGGAAAACTTGGTCTCTATTTCACCAGAAGAAATTAAGCTTGAACCCATTAGCTTTGATGGGAATGATGCTTGTCCTGTGCCACGGCCTGGAATGGTATTTAGTTCAGAGGCTGAGGCCAGATTGTACTACACAAAATATGCCAACCAAATGGGCTTTGGCATCATGACTAGAACCTCAAAAAAGGGACGTGATGGCAAAGTTAAATATTTAATACTTGTATGCTCTGGAATAACAAGAAGTGATGCTGCAAGGAAACAGTATTGTGCAGCTAGGATCAATTTGACTTTACGTAAAGATGGAACCTACCGAATTAATTCAGCTACTCTTGGTCATAGTCATGAATTGGGTTCACATCATCTACTCTCAAGTGATATTGACACGAGGGGTAAAAGGACATTGGATCAAGAAGTTGTTGACATGGGTGTTAAGAGGATATCAGACAAAAATGAATGCAGATACTACCTTCAGAAAGAAAGACATTTGATTGGGGAGAATGGAGATGGTGAAGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGTGATTGACTTGGATGATTTCTTCTGTGTGAGGAATGTTTTTTGGGCAGATGGAAAGAGCAGAGCTGCATATGAATCGTTTGGTGATGTGGTGATAGTTGATACTACATGTCTTTCTAATCGCTACAAAGTTCCGCTTGTAACTTTTGTTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGCTGTTATCGTATGAAGACTCAGAGTCATTTGCTTGGTTGTTTCAATCATTGTTGCATTGCATGTCTGATGTTCCCCCTCAAGGAATCATAACAGATCATTGCTGCAAGACCATGCAGAAAGCAGTTGAAACTGTATATCCCTCCACTCGACATCGGTGGTGTTTATCAAATATAATGGAAAAACTTCCCCAACTAATCCATGGATATGCTAATTACAAGTCCTTAAGAGATCATTTGCAGAATGTTGTATATGACACACCTACAATAAGTGAATTTGAGCAGAAATGGAAGAAGATTGTGGAGGATTTTGACCTCAAGGACAATAAATGGTTGAAAGAGTTGTTCCTTGAGAGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGAGTTCTGGGCTGGAATGTCTATTAATCCACACAATGAAAGCATGCATGCATTTTTTGATGGATATGTAAGCCGGCTAACAACTCTGAAGCAATTTGTTGATCAGTATGATAATGCTTTGCAATATAAGGCTGAGAAAGAATATGTAGCTGACATACATTCATCAAGTAACAGTCAAGCTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAAGCTGCATACACTCATGCCAAGTTTCTGGAGGTTCAACATGAATTTGTTGGAAAGGCAGATTGTAATGTGTCTGTTGCCTCTGATGATGGTTCTATTTTTCACTACAATGTCATTGAGGATGGGATAATAGATGATAAGCCTAAGGAATCCGTGGTTGAAGTCATATATAACAGGGTTGATTGTGATGTAAAATGTAGTTGTCACTTGTTTGAGTTCAGAGGCATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTGAAGGAGGTCCCCTGTAAATATATTTTGGATAGGTGGAGGAAAAATATTCGAAGGAAGTATGCTTATATCAAAACCAGCTATGGTGTTCAGCATTTTGAACCTCATGTGCAGAGGCTTGAACTATTATGCAATCAATTCAACAGTATTGCTGCTGTTGCTGCAGAATTTGAGGATACAAGTTCTTTTGTAAAGGATAACCTATGTAACTTAAAGGAGAAGCTTGAAGCATGGACAACCTTATTGAGGAACTCATCTCAGGTGGATGTAGAGAAATGTAATTATATGATGGATTGGGAATGA

>Glyma19g32051.1   sequence type=predicted peptide   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGELCHSRAPLDINSSGSEENLVSISPEEIKLEPISFDGNDACPVPRPGMVFSSEAEARLYYTKYANQMGFGIMTRTSKKGRDGKVKYLILVCSGITRSDAARKQYCAARINLTLRKDGTYRINSATLGHSHELGSHHLLSSDIDTRGKRTLDQEVVDMGVKRISDKNECRYYLQKERHLIGENGDGEALQKYLVRMQEQDRNFFYVIDLDDFFCVRNVFWADGKSRAAYESFGDVVIVDTTCLSNRYKVPLVTFVGVNHHGQSVLFGCGLLSYEDSESFAWLFQSLLHCMSDVPPQGIITDHCCKTMQKAVETVYPSTRHRWCLSNIMEKLPQLIHGYANYKSLRDHLQNVVYDTPTISEFEQKWKKIVEDFDLKDNKWLKELFLERHRWAPSFVRGEFWAGMSINPHNESMHAFFDGYVSRLTTLKQFVDQYDNALQYKAEKEYVADIHSSSNSQACVTKSPIERQFQAAYTHAKFLEVQHEFVGKADCNVSVASDDGSIFHYNVIEDGIIDDKPKESVVEVIYNRVDCDVKCSCHLFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNIRRKYAYIKTSYGVQHFEPHVQRLELLCNQFNSIAAVAAEFEDTSSFVKDNLCNLKEKLEAWTTLLRNSSQVDVEKCNYMMDWE*

>Glyma19g32051.2   sequence type=predicted peptide   gene model=Glyma19g32051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGELCHSRAPLDINSSGSEENLVSISPEEIKLEPISFDGNDACPVPRPGMVFSSEAEARLYYTKYANQMGFGIMTRTSKKGRDGKVKYLILVCSGITRSDAARKQYCAARINLTLRKDGTYRINSATLGHSHELGSHHLLSSDIDTRGKRTLDQEVVDMGVKRISDKNECRYYLQKERHLIGENGDGEALQKYLVRMQEQDRNFFYVIDLDDFFCVRNVFWADGKSRAAYESFGDVVIVDTTCLSNRYKVPLVTFVGVNHHGQSVLFGCGLLSYEDSESFAWLFQSLLHCMSDVPPQGIITDHCCKTMQKAVETVYPSTRHRWCLSNIMEKLPQLIHGYANYKSLRDHLQNVVYDTPTISEFEQKWKKIVEDFDLKDNKWLKELFLERHRWAPSFVRGEFWAGMSINPHNESMHAFFDGYVSRLTTLKQFVDQYDNALQYKAEKEYVADIHSSSNSQACVTKSPIERQFQAAYTHAKFLEVQHEFVGKADCNVSVASDDGSIFHYNVIEDGIIDDKPKESVVEVIYNRVDCDVKCSCHLFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNIRRKYAYIKTSYGVQHFEPHVQRLELLCNQFNSIAAVAAEFEDTSSFVKDNLCNLKEKLEAWTTLLRNSSQVDVEKCNYMMDWE*







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