Glyma19g31971 - SoyBase

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Report for Sequence Feature Glyma19g31971

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39743254
stop:	39753385
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31971

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41720	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:17403744-17407127 REVERSE LENGTH=822	SoyBase	E_val: 8.00E-152	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF165	Panther	EMB2654 (EMBRYO DEFECTIVE 2654)	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KTI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KTI0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337AA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337AA4 related cluster n=1 Tax=unknown RepID=UPI0002337AA4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31971

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g31971 not represented in the dataset	Glyma19g31971 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31971

Paralog	Evidence	Comments
Glyma03g29250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31971 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g138100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31971

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31971

Limit To All Plant Sequences

>Glyma19g31971.1   sequence type=CDS   gene model=Glyma19g31971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGAAAGCGCAGTTATCCTTAACTCACTCTTCCAACCGCGCTACTCCATCCCCGTTCTCTTCAATGGGGCCAGCACCGCATCTCACTATCTCCAACTCGCCGGCACCACCGAGTCAACTCGTCGCTGGAGAATCTCCATTTCATGCACGAAGAAGTCTAACAAGTTGGCATTCCAGGAAACGAAGGAAGGATTCGTGGACTACGACCGAGGCCAGCACGAGGTCTCCACGAAAATCTCCGGCCTCCGCAAGGACGACATTGCCGCCCGCTACCGCCTCCGCGTCTCCGGTAACCGCTTCCAGATGGACTGTACAGTATCGGAGGTCGTCGACCTCGTCCTCTCCCTTGACGTCTCCGACGACGACGTCGACGGCCTACTCAAGCGCTGGATAGGCCGCTTCGCGCGCAAGAATTTCCCCTTCCTCATCAAGGAGTTGACGCAGCGAGGGTCCATTGAACACTGTAACCGCGTGTTCCGGTGGATGAAGAACCAGAAGAAGTACTGCGCGCGTAATGATATGTACAATATGATGATTAGGTTGCACGCGAGGCATAACCGAACGGACCAGGCGCGTGGATTGTTCTTCGAGATGCAAGAGTGGAGTGCTGTTTGTGACACTGAAATATTTTTGCAGATTCCACCAAGTCGGTCAACTTATAACAACTTGATAAATGCTTGTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATAATGGTGTTGGGCCTGATCTTGTTACTCACAATATTATTCTATCTGCGATTAAAAGTGGGGCTCAGTATTCAAAAGCTTTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGGCACAACTACACTTAATATTGTTATCCATTGTCTAGTAAAACTTAGACAATATGACAAAGCTATTGATATTTTTAATTCCATGAGGGAGAAGAAGTCGGATTGTATCCTTGATGTTGTTACATTCACTAGTATCATTCACTTGTATTCTGTGTCAAGAGAAATATTTGATAGGATGAAGAGAAACCAGTTGAAGCCAAATCTTGTCAGTTACAATGCACTGATTGATGCCTATGGATCTAATGGTTTGCTGGCAGATGCAATTAAAATCTTGCGAGAAATGGAACAAGAAAGAATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCGGAAGGTGAAGATTGACACAGTGCTAACAGCAGCTGATATGCGAGGAATTAAATTAAACACAGTTGCATATAATGCAGCTATAGAAAGCTGTATGAATGGCCAAATTGTAGAGGCAGAGTCTGCATTCAACTTGATGAAATCATCATGTGTTGATAGATTGACAAAGAATTTGGCGAAAGCTTATGCACTCTTTGAAGAAATAGAAGCAAGTGGCATCAAGCTAGATACTATTGCCCGTGCAGCTCTAATGAGATCTTTTAATAAAGGCGGCCAACCAGGAAGGGTTCTTAGTCTTGCAGAAATTACGAGAGAAAAGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATTTAATGTTTCTAATTGTTATATTCCTGTCAAACTGAATGTGTCTTTTGCCATTAGATTACAAGATTGGAGGACAGCTGTTGATATGATCAAGTATTCTTCAAAATGTTGGTTGGCATCAGGTGCTGATGTTAACTTAAACACTTACTCTATATTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGATGGAGGATGCAGGAATTCATCCATCAAATGCAATGTACCATGATATATCCTCCTTTTCACAAAAATGCTGTGGGGATGAAAATGCTGCTGTCATAAAAGAAAGACTTGTCTTTGCCATCAAAATATGA

Predicted protein sequences of Glyma19g31971

Limit To All Plant Sequences

>Glyma19g31971.1   sequence type=predicted peptide   gene model=Glyma19g31971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSESAVILNSLFQPRYSIPVLFNGASTASHYLQLAGTTESTRRWRISISCTKKSNKLAFQETKEGFVDYDRGQHEVSTKISGLRKDDIAARYRLRVSGNRFQMDCTVSEVVDLVLSLDVSDDDVDGLLKRWIGRFARKNFPFLIKELTQRGSIEHCNRVFRWMKNQKKYCARNDMYNMMIRLHARHNRTDQARGLFFEMQEWSAVCDTEIFLQIPPSRSTYNNLINACGSSGNWKEALNNGVGPDLVTHNIILSAIKSGAQYSKALSYFELMKGTHIRPGTTTLNIVIHCLVKLRQYDKAIDIFNSMREKKSDCILDVVTFTSIIHLYSVSREIFDRMKRNQLKPNLVSYNALIDAYGSNGLLADAIKILREMEQERIQPNVVSICTLLAACGRCSRKVKIDTVLTAADMRGIKLNTVAYNAAIESCMNGQIVEAESAFNLMKSSCVDRLTKNLAKAYALFEEIEASGIKLDTIARAALMRSFNKGGQPGRVLSLAEITREKKFLSVIPYFLKWYLPVAFNVSNCYIPVKLNVSFAIRLQDWRTAVDMIKYSSKCWLASGADVNLNTYSILLKNLLSSGNWRKYLEMEDAGIHPSNAMYHDISSFSQKCCGDENAAVIKERLVFAIKI*

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