Glyma19g31960 - SoyBase

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Report for Sequence Feature Glyma19g31960

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39732816
stop:	39737046
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41710	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr2:17400274-17402903 REVERSE LENGTH=423	SoyBase	E_val: 6.00E-172	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF332	Panther		JGI		ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7KTH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2-like ethylene-responsive transcription factor n=1 Tax=Medicago truncatula RepID=G7KTH8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E8D4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E8D4 related cluster n=1 Tax=unknown RepID=UPI000233E8D4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31960

Paralog	Evidence	Comments
Glyma03g29240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g138000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31960

Limit To All Plant Sequences

>Glyma19g31960.1   sequence type=CDS   gene model=Glyma19g31960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGTCTTCCTCCGATCCAGGAAAGTCCGCGGAGACGTCGGAGGCGGCGGTGGTGGTGGCGAACGACCAGCTCTTGCTCTACAGAGGATTGAAGAAGGCCAAGAAGGAGAGAGGTTGCACGGCCAAAGAGCGCATCAGCAAAATGCCTCCGTGCGCCGCCGGCAAACGCAGTTCCATATACCGCGGCGTCACGAGGCACAGGTGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAGAGTACGTGGAACCAAAATCAGAATAAGAAGGGAAAGCAAGTTTACTTGGGGGCGTATGATGACGAGGAAGCAGCGGCTAGAGCATATGATCTTGCTGCTCTCAAATATTGGGGTCCTGGGACTCTCATTAACTTTCCTGTGACGGATTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCAAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGACTAGCAAAATATCGTGGACTCTCCAGTCGATGGGATCCATCGTATGGCCGTATGTCTGGATCTGATTACTTCAATAGCATGCATTATGGTGCAGGGGATGATTCTGCAGCAGAAAGTGAATATGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGAGTAGACATTCTGATGCTGGGACAAGATTATCAGAAGAAAAGAAACTTGGTTCTGCTGGAGATATTTGCATTGAAATTAAGCAATTGGAGCAGAAAGTTCAACCTACAGCACCTTACCAGATGCCACAGTTAGGAAGGCCCCAAAATGAGAAAAAGCATAGAAGTTCTTCAGTTTCTGCCTTAAGTATCTTGTCACAATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCGTCGAAGACACTGGAAAATATCATAGATAATGATGAGAATGAAAACAAAAATACAATCAACAAGTTGGATCATGGCAAGGCAGTTGAGAAACCATCAAATCATGACGGAGGCAATGACCGGCTTGACATTGCAACGGGAATGAGTGGAACAATGTCTCTTCAAAGAAATGTTTACCCATTGACACCATTCTTGTCTGCACCACTTTTAACAGCCTACAATACTGTTGATCCATTGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCCATGCTTCCTGCTGGCCTTTCTCATACAGCTGAGGTTACAAAGACAGAGACCAGTTCAACGTACACGATGTTTCGGCCAGAGGAATGA

Predicted protein sequences of Glyma19g31960

Limit To All Plant Sequences

>Glyma19g31960.1   sequence type=predicted peptide   gene model=Glyma19g31960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSSDPGKSAETSEAAVVVANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLAKYRGLSSRWDPSYGRMSGSDYFNSMHYGAGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKSRHSDAGTRLSEEKKLGSAGDICIEIKQLEQKVQPTAPYQMPQLGRPQNEKKHRSSSVSALSILSQSAAYKSLQEKASKTLENIIDNDENENKNTINKLDHGKAVEKPSNHDGGNDRLDIATGMSGTMSLQRNVYPLTPFLSAPLLTAYNTVDPLVDPVLWTSLVPMLPAGLSHTAEVTKTETSSTYTMFRPEE*

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