Glyma19g31940 - SoyBase

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Report for Sequence Feature Glyma19g31940

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39720496
stop:	39723420
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41690	AT	Annotation by Michelle Graham. TAIR10: heat shock transcription factor B3 \| chr2:17381723-17382577 FORWARD LENGTH=244	SoyBase	E_val: 3.00E-69	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR10015	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PTHR10015:SF7	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PF00447	PFAM	HSF-type DNA-binding	JGI		ISS
UniRef100_G7KTH6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat stress transcription factor B-3 n=1 Tax=Medicago truncatula RepID=G7KTH6_MEDTR	SoyBase	E_val: 7.00E-121	ISS
UniRef100_I1N8Z6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N8Z6_SOYBN	SoyBase	E_val: 1.00E-170	ISS

Expression Patterns of Glyma19g31940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31940

Paralog	Evidence	Comments
Glyma03g29190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g137800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31940

Limit To All Plant Sequences

>Glyma19g31940.2   sequence type=CDS   gene model=Glyma19g31940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAACAAGCAATAAGGGGTTGTTGGAATGTGGAAGGAAGTGCACTCCACCGCCGTTTTTGTTGAAGACTTATATGCTTGTGGAGGATCCGGCCACCGACGACGTCATTTCGTGGAATGCCAAAGGGACGGCGTTCGTGGTGTGGCAGCCGCCGGAGTTTGCTCGGGATCTCCTCCCAACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTACGCCAGCTCAATACTTATGGCTTTCGTAAAGTTGCAACAAGCAGATGGGAGTTTTTCAATGACAAGTTCAAGAAAGGTGAAAGAGAACTTCTACATGAGATTCGGCGAAGGAAAGCTTGGAGCAGCAAGCAACAACCTAATGCACCAAACCAAGGCACACCCCAAGACTCTGATGAGGATCAAAGGTCCTCATCAACCTCATCATCTTTTGGTTACACTACTCTTGTGGATGAAAACAAGCGACTCAAGAAGGAGAATGGGGTGCTGAACTCTGAGCTCACAAGCATGAAAAGGAAGTGCAAGGAACTGCTTGATTTGGTTGCCACATATTCATCACATGCAAAGGAGGAGAAAAAGGATGAAAGGCCAATGTTGTTTGGAGTGAGATTAGAGGTTCAAGGAGGGAGGGAGATGAAGAGGAATAGGGCTGAGATGAGTGAAAGCACAAGCATTATGTTGTCTCAGTCATGCAAATAG

Predicted protein sequences of Glyma19g31940

Limit To All Plant Sequences

>Glyma19g31940.2   sequence type=predicted peptide   gene model=Glyma19g31940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGTSNKGLLECGRKCTPPPFLLKTYMLVEDPATDDVISWNAKGTAFVVWQPPEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFFNDKFKKGERELLHEIRRRKAWSSKQQPNAPNQGTPQDSDEDQRSSSTSSSFGYTTLVDENKRLKKENGVLNSELTSMKRKCKELLDLVATYSSHAKEEKKDERPMLFGVRLEVQGGREMKRNRAEMSESTSIMLSQSCK*

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