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Report for Sequence Feature Glyma19g31926

Feature Type:gene_model
Chromosome:Gm19
Start:39704867
stop:39709202
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g31926
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G21090AT Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein | chr3:7391497-7394933 REVERSE LENGTH=691 SoyBaseE_val: 0ISS
GO:0009062GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
KOG0061 KOG Transporter, ABC superfamily (Breast cancer resistance protein) JGI ISS
PTHR19241Panther ATP-BINDING CASSETTE TRANSPORTER JGI ISS
PTHR19241:SF20Panther ABC TRANSPORTER JGI ISS
PF00005PFAM ABC transporter JGI ISS
PF01061PFAM ABC-2 type transporter JGI ISS
UniRef100_B9II87UniRef Annotation by Michelle Graham. Most informative UniRef hit: White-brown-complex ABC transporter family n=1 Tax=Populus trichocarpa RepID=B9II87_POPTR SoyBaseE_val: 0ISS
UniRef100_UPI000233ECF5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233ECF5 related cluster n=1 Tax=unknown RepID=UPI000233ECF5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g31926
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g31926 not represented in the dataset
Glyma19g31926 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31926
ParalogEvidenceComments
Glyma03g29150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31926 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g31926
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g31926
>Glyma19g31926.1   sequence type=CDS   gene model=Glyma19g31926   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATATTATGGGAAGATATAACCGTCCAGCACCGTTTTTTGGAAGACAAGAAGAAGTTGCTTAGTGGAATCACTGGTTTTGCTGAAGCTGGTAGGATCATGGCTGTCATGGGTCCTTCTGGCTCTGGCAAAACCACCCTCCTCGACTCATTGGCTGGAAGACTTCCTGTAAATGTTGTTGTAACCGGGAACATTCTAATCAATGGGAAGAGAAGCTTATATTCCAAGGAAGTGTCCTACGTTGCACAAGAGGAACTTTTCTTGGGTACTTTGACTGTAAAAGAGACCCTAACTTACTCTGCAAACACGAGGCTTCCTTCTAAAATGAGCAAAGAAGAGATAAACAAAGTGGTGGAAGAAACAATAATGGAAATGGGTCTGGAAGATTGTGCAGATACTAGGATTGGAAATTGGCATTGTAGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGGCCTTGAGATTCTGACACAACCCCATGTCTTACTTCTTGATGAACCTACTACTGGACTTGATAGTGCCTCAGCTTTCTATGTCATTCAATCTCTATGCCACATTGCTCTCAATGGAAAGATAGTTATCTGCTCCATTCACCAACCCAGTAGTGAAACTTTTGATCTATTTGATGATTTGCTTTTGCTCTCAATTGGGGAAACTGTTTATTTTGGGGAAGCCAACATGGCTCTAAAGTTTTTTGCTGATGCAGGGTTACCCTTCCCTTCTAGAAGAAATCCTTCAGATCATTTCCTTCTGTGTATCAATTTGGACTTTGACCTGCTTACTTCAGCTCTAGCAAGATCACAGTTAGATTTGCCATCTTCATCAAATTCAGCACTGGGAACAAAAAAAGCCGAGATTAGAGAGACACTCATTCGAAGTTATAAAGGTTCAGGGATAATGATCAATGCGAGAAGAAGAATTCAACAACTGAAACCTAATGAGGAGCAAAAAATTAAGCCCAACATAGGTAGCAGTGCCACATGGTGGAAGCAATTGTGCACATTGACCAAGCGATCTTTCGTAAACATGACTAGGGATATTGGTTACTACTGGCTGAGGATGGTATTCTACATATTGGTAGGAATCACTGTTGGCACCCTCTATTTTCATATTGGCACAGCCAACAACTCAATATTGGATAGAGGAAAGTGTGTATCATTCATCTATGGGTTCAATATTTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTGTTCTATGGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGCATTTGTAGTTTCAAACATCATATCATCATTCCCTTTCCTTGTTCTAACATCTCTCTCGTCTGGAATAATCATTTACTTCATGGTGCAACTTCATCCGGGTTTAACTAATTTTGCATTTTTCTGTATCGACTTATTCTGCTGCATATCCGTTGTTGAGTGCTGCATGATGATTGTAGCCTCAGTGGTCCCCAATGTGCTGATGGGCTTAGGAACAGGAACTGGTGTAATTGTTTTCATGATGATGCCCTCTCTATTATTCAGACCACTGCAAGACATTCCAAAGTTCTTTTGGCGCTACCCCATGTCATACCTCAGTTTTACTACATGGGCAGTGCAGGGACAGTACAAGAATGACATGCTGGGGCTTGAATTTGATCCTCTGCTACCTGGGAACCCAAAACTCACTGGGGAGCAAGTCCTAACATTGTTATTTGGTGTCCCGTTGAATCATGGCAAATGGTGGGACTTAACAGCATTGATTATTTTGTTAATAGTTCACAGATTGCTTCTTTTCTTGGCGCTTCGGTATAGCAAAAGATCATCGACATCCCCCATGTTGTGGTTTCATAGATGCCGGGGAAAGTCTACAATTTGCAGAAAGATGTCTATTTAG
Predicted protein sequences of Glyma19g31926
>Glyma19g31926.1   sequence type=predicted peptide   gene model=Glyma19g31926   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILWEDITVQHRFLEDKKKLLSGITGFAEAGRIMAVMGPSGSGKTTLLDSLAGRLPVNVVVTGNILINGKRSLYSKEVSYVAQEELFLGTLTVKETLTYSANTRLPSKMSKEEINKVVEETIMEMGLEDCADTRIGNWHCRGISNGEKKRLSIGLEILTQPHVLLLDEPTTGLDSASAFYVIQSLCHIALNGKIVICSIHQPSSETFDLFDDLLLLSIGETVYFGEANMALKFFADAGLPFPSRRNPSDHFLLCINLDFDLLTSALARSQLDLPSSSNSALGTKKAEIRETLIRSYKGSGIMINARRRIQQLKPNEEQKIKPNIGSSATWWKQLCTLTKRSFVNMTRDIGYYWLRMVFYILVGITVGTLYFHIGTANNSILDRGKCVSFIYGFNICLSCGGLPFFIEELKVFYGERSKGHYGEAAFVVSNIISSFPFLVLTSLSSGIIIYFMVQLHPGLTNFAFFCIDLFCCISVVECCMMIVASVVPNVLMGLGTGTGVIVFMMMPSLLFRPLQDIPKFFWRYPMSYLSFTTWAVQGQYKNDMLGLEFDPLLPGNPKLTGEQVLTLLFGVPLNHGKWWDLTALIILLIVHRLLLFLALRYSKRSSTSPMLWFHRCRGKSTICRKMSI*






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