Glyma19g31920 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g31920

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39694214
stop:	39699289
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41670	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:17374118-17376177 FORWARD LENGTH=386	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG2485	KOG	Conserved ATP/GTP binding protein	JGI		ISS
PTHR11089	Panther	GTP-BINDING PROTEIN-RELATED	JGI		ISS
PTHR11089:SF4	Panther	GTP-BINDING PROTEIN-RELATED	JGI		ISS
PF01926	PFAM	GTPase of unknown function	JGI		ISS
UniRef100_G7KTH2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial GTPase n=1 Tax=Medicago truncatula RepID=G7KTH2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8Z3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8Z3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31920

Paralog	Evidence	Comments
Glyma03g29110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g137600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31920

Limit To All Plant Sequences

>Glyma19g31920.1   sequence type=CDS   gene model=Glyma19g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGGCTGAAGGAATTGCTGAAGAAAGGGTTAGGTTTAGGCGACATGGCGTTCAACGCCGGCGGCGGAGCCATCACCTGGTTCCCCGGCCACATGGCCGCCGCCACACGCGCCATCCGCCACCGCCTCAAACTCGCCGACCTCGTCATCGAAGTCCGCGACGCTCGCATTCCCTTCTCCTCCGCCAACGCCGATCTCCAGCCCCACCTCTCCGCCAAACGACGCGTCGTCGCACTCAATAAAAAAGACCTCGCCAACCCTAACATCATGCATAAATGGACGCATTATTTTGAGAGTTGTAATCAGAATTGCGTTGCGATAAACGCGCACAGCATGAGTTCCGTGAAGAAGCTTCTGGAGGTGGTGGAGTTCAAGTTGAAGGAAGTGATTTGCAGGGAACCCACGCTGCTTGTGATGGTGGTCGGTGTTCCCAACGTTGGCAAGTCTGCTTTGATTAACTCCATTCATCAAATTGCAAAGTCTCGGTTTCCTGTGCAGGAGAAGATGAAGCGTGCTGCTGTGGGTCCGCTACCTGGTGTTACTCAAGACATTGCTGGATTCAAGATAGCACATAAACCAAGCATATATGTCCTAGATACCCCAGGGGTTCTGGTTCCAAGTATCTCAGACATAGAGACAGGGTTAAAACTGGCTCTGGCAGAGTCTGTCAAAGATTCAGTAGTAGGTGAGGAACGTATTGCTCAATACTTATTGGCAGTTTTGGATACCCGGGGGACTCCACTTCACTGGAATCACCTAAATAACAGGAGAATAGATGGGATTGAATATGAAGCTGAGGAAAATCCTGAATATAGTCTGAAAAATCTTAAGCCAAAGAGAAGAAATCTGCCAAATAGATCTGATTTGGTCTATGTTGAGGATCTTGTAATGGGAGTTCAGCGTGCACTCTATTCAACTTTAACAGAATTCGATGGGAACGTAGAAGATGAGAGTGACCTGGAGAGCCTTATTGACCTGCAATTTAGTGCACTCCAGAAGGCATTGAAGATACCTCACAAGGCTTCAGAAGCGCGGTTAATGGTATCCAAGAAGTTCCTCACTCTATTCAGGACCGGTAAGCTTGGACCTTTCATTCTCGATGATGTCCCGAATGTCAAGCCTGTGTCATAA

Predicted protein sequences of Glyma19g31920

Limit To All Plant Sequences

>Glyma19g31920.1   sequence type=predicted peptide   gene model=Glyma19g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGLKELLKKGLGLGDMAFNAGGGAITWFPGHMAAATRAIRHRLKLADLVIEVRDARIPFSSANADLQPHLSAKRRVVALNKKDLANPNIMHKWTHYFESCNQNCVAINAHSMSSVKKLLEVVEFKLKEVICREPTLLVMVVGVPNVGKSALINSIHQIAKSRFPVQEKMKRAAVGPLPGVTQDIAGFKIAHKPSIYVLDTPGVLVPSISDIETGLKLALAESVKDSVVGEERIAQYLLAVLDTRGTPLHWNHLNNRRIDGIEYEAEENPEYSLKNLKPKRRNLPNRSDLVYVEDLVMGVQRALYSTLTEFDGNVEDESDLESLIDLQFSALQKALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPNVKPVS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain