Glyma19g31870 - SoyBase

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Report for Sequence Feature Glyma19g31870

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39641985
stop:	39646268
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20990	AT	Annotation by Michelle Graham. TAIR10: alpha carbonic anhydrase 4 \| chr4:11219772-11221126 FORWARD LENGTH=267	SoyBase	E_val: 3.00E-98	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0004089	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0382	KOG	Carbonic anhydrase	JGI		ISS
PTHR18952	Panther	CARBONIC ANHYDRASE	JGI		ISS
PTHR18952:SF2	Panther	gb def: similar to carbonic anhydrase va, mitochondrial precursor, carbonic anhydrase v,	JGI		ISS
PF00194	PFAM	Eukaryotic-type carbonic anhydrase	JGI		ISS
UniRef100_G7KSM1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 n=1 Tax=Medicago truncatula RepID=G7KSM1_MEDTR	SoyBase	E_val: 5.00E-112	ISS
UniRef100_UPI000233ECF2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ECF2 related cluster n=1 Tax=unknown RepID=UPI000233ECF2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g31870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g137100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31870

Limit To All Plant Sequences

>Glyma19g31870.1   sequence type=CDS   gene model=Glyma19g31870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATGGTGCAAAGAAGATGAACGGGTTGAAAAAAGATGAAGAATATACCTACGCTATAGGAAGTAGCACAGGGCCAGAGAATTGGTGGCGTATCAACCAAAAATGGAAAACATGTGGGGATGGAAAACTACAATCTCCCATTGATCTGCTTGACCAAAGGGTTCAAGAGCTTCCTCAATTGGGTAAACTTAAGAAAGCTTACAAATCAGCTCCTGCTGTCCTAAAGAATAGGGGTCATGACATCGTGCTGGAATGGAAAGGAGATGCAGGCCAGCTTAACATAAATGAAACTTACTATAATCTGATTCAATGTCATTGGCATACACCTTCAGAGCACACGTTGAATGGAACAAAGTTTGACTTGGAACTGCATGCAGTCCATACAACCTCTAAAGGAGAGTTTGCTGTTATTGGAATATTGTATAAAATTGGTTCTCCAGATCCCTTTTTTTCAAAGCTGCTCAATGACATAAAATCAAGTGTGGACAAGGATATAGATGTAGGACTAATCAACTCAAGAGAGATCAAGTTTAAAAGCAGACCGTACTACAGATATGTTGGTTCTCTTACAACTCCAGCATGCACTGAAGGTGTTGTTTGGACAATTGTGAAGAAGGTCAGGACAGTCTCAAGCGAGCAATTAAGTGCCTTGAAAGGAGCTGTTCATCATGGATATGAGGAAAATGCAAGGCCAACGCAGGAACTTGGTGGAAGACAAGTTTGGTTATATGGACCTATGGAGAATGAAAAGCCTACTTAA

Predicted protein sequences of Glyma19g31870

Limit To All Plant Sequences

>Glyma19g31870.1   sequence type=predicted peptide   gene model=Glyma19g31870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNGAKKMNGLKKDEEYTYAIGSSTGPENWWRINQKWKTCGDGKLQSPIDLLDQRVQELPQLGKLKKAYKSAPAVLKNRGHDIVLEWKGDAGQLNINETYYNLIQCHWHTPSEHTLNGTKFDLELHAVHTTSKGEFAVIGILYKIGSPDPFFSKLLNDIKSSVDKDIDVGLINSREIKFKSRPYYRYVGSLTTPACTEGVVWTIVKKVRTVSSEQLSALKGAVHHGYEENARPTQELGGRQVWLYGPMENEKPT*

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